Click here to switch to the map view.

The map label for this gene is ybhS [H]

Identifier: 146339869

GI number: 146339869

Start: 3070739

End: 3071896

Strand: Direct

Name: ybhS [H]

Synonym: BRADO2871

Alternate gene names: 146339869

Gene position: 3070739-3071896 (Clockwise)

Preceding gene: 146339868

Following gene: 146339870

Centisome position: 41.18

GC content: 63.47

Gene sequence:

>1158_bases
ATGAGCGACACAACGCTTTCTCACGTCTCTCCGGAGCCGCGCTTCGCCTTCTGGCGCCGCACCTATGCGATGGTGGTGAA
GGAGTTCATCCAGCTGCGCCGGGACCGGGTATCGTTCGCGATGATCGTGATGCTGCCGGTGATGCAGCTGATGCTTTTCG
GCTACGCGATCAACACCACGCCGCACCATCTTCCCGCAGCGGTGCTGCTGCAGGAGGACAGCGATCTCGGCCGCTCGATC
CTGAAAGCGATGGAGAACACCGCCTATTTCAGCTTCACCCGAGAGGTCGGCAGCGTCGCGGAGCTCGACGATCTGCTGCT
GTCCGGCAAGGTCCTGTTCGGCGTCGAGATCCCGCGCGGCTTCGAGCGGGCGGTCCGCCGCGGCGACCGCCCGGCGCTAC
TGGTGGCCGCCGATGCCACCGATCCGGTCGCGGCGTCCTCCGCGCTGTCCTCGCTCGGCACCATCGTGCAGACCGCGCTC
GCGCATGATCTGTACACCGGCGATCCCGTCACCGCGGCGTTCGAGATCAGGGCGCATGCGCGCTACAATCCAGCGGCCTC
GTCGCGGCTCAACATCGTTCCGGGCCTGGTCGGGACCATCCTGACCATGACCATGCTGATCTTCACCGCGCTGTCCGTGA
CACGCGAGATCGAGCGCGGCACAATGGAGAGCCTGCTGTCGATGCCGATCAAGCCGGTCGAGGTGATGCTCGGCAAGATC
ATCCCTTACGTGCTGGTCGGCTTCCTGCAGGCTACCATCATCATCGGCATCGGCGTGCTGCTGTTCGGCGTGCCTGTGAT
GGGCAGCCTGCTGCTGCTGGCTTTGCTCTCGACGCTGTTCATCGCAACCAACCTCTCGATCGGCTACACGTTTTCCACCC
TGGCGCAGAACCAGCTGCAGGCCATGCAGCTGTCGATGATGTTCTTCCTGCCGAGCATACTGCTCTCCGGATTCATGTTT
CCGTTTCTCGGCATGCCGCAATGGGCGCAGATCGTCGGCGAGTGCCTGCCGCTGACGCATTACCTGCGCATCGTCCGGGC
CATCATGCTCAAGGGCTCGACGCTCCCAAACCTGCAGCATGATACGATCGCGTTGTTCGGTCTCATGCTGTTCGCCATGA
CGGTTGCCGTCTTCCGCTTCCGCCGCACGCTCGATTGA

Upstream 100 bases:

>100_bases
CGCCCTGGCGCGACAAGCCCGGTCTGCACTGGCAGCCCGCCGCACCGTCGCTCGAGGATGTCTTCATCGACCTGATGAAC
CGCTCGCGGGACAACTTCCA

Downstream 100 bases:

>100_bases
GGCACAATGCCGGTCGGGCGGACAACCGGCTGAGGCAGGATGCGGATCGCGAGGGCAGGCAAGGGGAGCGGTGCGCCACC
CGCGGCGGCGGAGTTCAACC

Product: putative ABC transporter (permeasee)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 384

Protein sequence:

>385_residues
MSDTTLSHVSPEPRFAFWRRTYAMVVKEFIQLRRDRVSFAMIVMLPVMQLMLFGYAINTTPHHLPAAVLLQEDSDLGRSI
LKAMENTAYFSFTREVGSVAELDDLLLSGKVLFGVEIPRGFERAVRRGDRPALLVAADATDPVAASSALSSLGTIVQTAL
AHDLYTGDPVTAAFEIRAHARYNPAASSRLNIVPGLVGTILTMTMLIFTALSVTREIERGTMESLLSMPIKPVEVMLGKI
IPYVLVGFLQATIIIGIGVLLFGVPVMGSLLLLALLSTLFIATNLSIGYTFSTLAQNQLQAMQLSMMFFLPSILLSGFMF
PFLGMPQWAQIVGECLPLTHYLRIVRAIMLKGSTLPNLQHDTIALFGLMLFAMTVAVFRFRRTLD

Sequences:

>Translated_385_residues
MSDTTLSHVSPEPRFAFWRRTYAMVVKEFIQLRRDRVSFAMIVMLPVMQLMLFGYAINTTPHHLPAAVLLQEDSDLGRSI
LKAMENTAYFSFTREVGSVAELDDLLLSGKVLFGVEIPRGFERAVRRGDRPALLVAADATDPVAASSALSSLGTIVQTAL
AHDLYTGDPVTAAFEIRAHARYNPAASSRLNIVPGLVGTILTMTMLIFTALSVTREIERGTMESLLSMPIKPVEVMLGKI
IPYVLVGFLQATIIIGIGVLLFGVPVMGSLLLLALLSTLFIATNLSIGYTFSTLAQNQLQAMQLSMMFFLPSILLSGFMF
PFLGMPQWAQIVGECLPLTHYLRIVRAIMLKGSTLPNLQHDTIALFGLMLFAMTVAVFRFRRTLD
>Mature_384_residues
SDTTLSHVSPEPRFAFWRRTYAMVVKEFIQLRRDRVSFAMIVMLPVMQLMLFGYAINTTPHHLPAAVLLQEDSDLGRSIL
KAMENTAYFSFTREVGSVAELDDLLLSGKVLFGVEIPRGFERAVRRGDRPALLVAADATDPVAASSALSSLGTIVQTALA
HDLYTGDPVTAAFEIRAHARYNPAASSRLNIVPGLVGTILTMTMLIFTALSVTREIERGTMESLLSMPIKPVEVMLGKII
PYVLVGFLQATIIIGIGVLLFGVPVMGSLLLLALLSTLFIATNLSIGYTFSTLAQNQLQAMQLSMMFFLPSILLSGFMFP
FLGMPQWAQIVGECLPLTHYLRIVRAIMLKGSTLPNLQHDTIALFGLMLFAMTVAVFRFRRTLD

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=341, Percent_Identity=34.0175953079179, Blast_Score=177, Evalue=1e-45,
Organism=Escherichia coli, GI1787010, Length=366, Percent_Identity=26.5027322404372, Blast_Score=142, Evalue=4e-35,
Organism=Escherichia coli, GI48994943, Length=352, Percent_Identity=29.5454545454545, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI226510979, Length=387, Percent_Identity=27.6485788113695, Blast_Score=105, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24650855, Length=370, Percent_Identity=24.0540540540541, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24650853, Length=373, Percent_Identity=23.8605898123324, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI85725260, Length=405, Percent_Identity=22.962962962963, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI85725262, Length=405, Percent_Identity=23.2098765432099, Blast_Score=68, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 42380; Mature: 42249

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTTLSHVSPEPRFAFWRRTYAMVVKEFIQLRRDRVSFAMIVMLPVMQLMLFGYAINTT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PHHLPAAVLLQEDSDLGRSILKAMENTAYFSFTREVGSVAELDDLLLSGKVLFGVEIPRG
CCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCH
FERAVRRGDRPALLVAADATDPVAASSALSSLGTIVQTALAHDLYTGDPVTAAFEIRAHA
HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
RYNPAASSRLNIVPGLVGTILTMTMLIFTALSVTREIERGTMESLLSMPIKPVEVMLGKI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IPYVLVGFLQATIIIGIGVLLFGVPVMGSLLLLALLSTLFIATNLSIGYTFSTLAQNQLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AMQLSMMFFLPSILLSGFMFPFLGMPQWAQIVGECLPLTHYLRIVRAIMLKGSTLPNLQH
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DTIALFGLMLFAMTVAVFRFRRTLD
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SDTTLSHVSPEPRFAFWRRTYAMVVKEFIQLRRDRVSFAMIVMLPVMQLMLFGYAINTT
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PHHLPAAVLLQEDSDLGRSILKAMENTAYFSFTREVGSVAELDDLLLSGKVLFGVEIPRG
CCCCCHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEEEECCCH
FERAVRRGDRPALLVAADATDPVAASSALSSLGTIVQTALAHDLYTGDPVTAAFEIRAHA
HHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
RYNPAASSRLNIVPGLVGTILTMTMLIFTALSVTREIERGTMESLLSMPIKPVEVMLGKI
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
IPYVLVGFLQATIIIGIGVLLFGVPVMGSLLLLALLSTLFIATNLSIGYTFSTLAQNQLQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
AMQLSMMFFLPSILLSGFMFPFLGMPQWAQIVGECLPLTHYLRIVRAIMLKGSTLPNLQH
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DTIALFGLMLFAMTVAVFRFRRTLD
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]