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The map label for this gene is ymdB [C]

Identifier: 146339793

GI number: 146339793

Start: 3001375

End: 3001944

Strand: Direct

Name: ymdB [C]

Synonym: BRADO2794

Alternate gene names: 146339793

Gene position: 3001375-3001944 (Clockwise)

Preceding gene: 146339792

Following gene: 146339794

Centisome position: 40.25

GC content: 68.6

Gene sequence:

>570_bases
CTGAGCTATCGCGTCCGCACCATCGGCGCGACCCGCTTCGAGGTCGTCACCGCCGACATCACCAAGCTCGGCGTTGACGC
GATCGTCAACGCCGCGAACTCGTCTCTGCTCGGCGGTGGCGGCGTCGACGGCGCGATCCATCGCGCGGCTGGGCCGGATC
TCGCCATGGAGTGCCGCATGCTCCATGGCTGCAAGACCGGCGAGGCCAAGATCACCAAGGGCTACCGGCTGCCGGCGCGC
CATGTGATCCACACCGTCGGCCCGGTCTGGCAGGGCGGCGATCGCGGCGAGCCGGAGCTGCTCGCCTCGTGCTATCGTCG
CTCGATCGAGCTGTGCCACAAGCATCTTCTGGACTCGGTTGCGTTCCCCGCGATCTCGACCGGGATCTTCCGCTTTCCCG
CCGATCGTGCGGCCGCGATCGCGGTCGCCACTTCGATCGAGGCCATCAGCGAGGAGACCTCGCTCTCTCAGATCGTGTTC
TGCTGCTTCTCCGAGCAGAGCGCCGAGCTGCACGACGCGGCGCTGAGCGAGGCGATCGCCAGCCGCTTCCGTGCCGGTCC
GCCGCGGTGA

Upstream 100 bases:

>100_bases
TCATCGGCGGCTGCGACATCGTCCGCGAAATGTTCCAGAGCGGCGAACTGCAGCAGCTGTTCACCGACAAGGGCATTCCG
GTCGGCACGGCGGCCTCAGC

Downstream 100 bases:

>100_bases
TCGCGATCTCTCGGCATCGGAGCAGCTAGCATGGATCGGCTGATCTCGCGGCGGACGCTGCTCAGCGCGTTGCTCGCGGC
GCCGGTTCTGCCCGTTCTGG

Product: putative Appr-1-p processing enzyme family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSYRVRTIGATRFEVVTADITKLGVDAIVNAANSSLLGGGGVDGAIHRAAGPDLAMECRMLHGCKTGEAKITKGYRLPAR
HVIHTVGPVWQGGDRGEPELLASCYRRSIELCHKHLLDSVAFPAISTGIFRFPADRAAAIAVATSIEAISEETSLSQIVF
CCFSEQSAELHDAALSEAIASRFRAGPPR

Sequences:

>Translated_189_residues
MSYRVRTIGATRFEVVTADITKLGVDAIVNAANSSLLGGGGVDGAIHRAAGPDLAMECRMLHGCKTGEAKITKGYRLPAR
HVIHTVGPVWQGGDRGEPELLASCYRRSIELCHKHLLDSVAFPAISTGIFRFPADRAAAIAVATSIEAISEETSLSQIVF
CCFSEQSAELHDAALSEAIASRFRAGPPR
>Mature_188_residues
SYRVRTIGATRFEVVTADITKLGVDAIVNAANSSLLGGGGVDGAIHRAAGPDLAMECRMLHGCKTGEAKITKGYRLPARH
VIHTVGPVWQGGDRGEPELLASCYRRSIELCHKHLLDSVAFPAISTGIFRFPADRAAAIAVATSIEAISEETSLSQIVFC
CFSEQSAELHDAALSEAIASRFRAGPPR

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=170, Percent_Identity=52.9411764705882, Blast_Score=169, Evalue=1e-42,
Organism=Homo sapiens, GI117968621, Length=176, Percent_Identity=50.5681818181818, Blast_Score=166, Evalue=1e-41,
Organism=Homo sapiens, GI154813199, Length=192, Percent_Identity=35.9375, Blast_Score=97, Evalue=6e-21,
Organism=Homo sapiens, GI207450721, Length=127, Percent_Identity=41.7322834645669, Blast_Score=97, Evalue=7e-21,
Organism=Homo sapiens, GI8923143, Length=127, Percent_Identity=41.7322834645669, Blast_Score=97, Evalue=8e-21,
Organism=Homo sapiens, GI20336746, Length=162, Percent_Identity=30.8641975308642, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226371718, Length=134, Percent_Identity=35.0746268656716, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI226371716, Length=134, Percent_Identity=35.0746268656716, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI226371714, Length=134, Percent_Identity=35.0746268656716, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI226371712, Length=134, Percent_Identity=35.0746268656716, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI226371710, Length=134, Percent_Identity=35.0746268656716, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI226371706, Length=134, Percent_Identity=35.0746268656716, Blast_Score=74, Evalue=7e-14,
Organism=Escherichia coli, GI1787283, Length=171, Percent_Identity=51.4619883040936, Blast_Score=166, Evalue=9e-43,
Organism=Caenorhabditis elegans, GI17538214, Length=174, Percent_Identity=42.5287356321839, Blast_Score=129, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24586353, Length=158, Percent_Identity=33.5443037974684, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 20104; Mature: 19973

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYRVRTIGATRFEVVTADITKLGVDAIVNAANSSLLGGGGVDGAIHRAAGPDLAMECRM
CCEEEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHH
LHGCKTGEAKITKGYRLPARHVIHTVGPVWQGGDRGEPELLASCYRRSIELCHKHLLDSV
HHCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AFPAISTGIFRFPADRAAAIAVATSIEAISEETSLSQIVFCCFSEQSAELHDAALSEAIA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SRFRAGPPR
HHHCCCCCC
>Mature Secondary Structure 
SYRVRTIGATRFEVVTADITKLGVDAIVNAANSSLLGGGGVDGAIHRAAGPDLAMECRM
CEEEEECCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCHHHHHHH
LHGCKTGEAKITKGYRLPARHVIHTVGPVWQGGDRGEPELLASCYRRSIELCHKHLLDSV
HHCCCCCCCEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AFPAISTGIFRFPADRAAAIAVATSIEAISEETSLSQIVFCCFSEQSAELHDAALSEAIA
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
SRFRAGPPR
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]