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The map label for this gene is ltrA [H]

Identifier: 146339476

GI number: 146339476

Start: 2625484

End: 2626704

Strand: Reverse

Name: ltrA [H]

Synonym: BRADO2464

Alternate gene names: 146339476

Gene position: 2626704-2625484 (Counterclockwise)

Preceding gene: 146339479

Following gene: 146339475

Centisome position: 35.23

GC content: 63.31

Gene sequence:

>1221_bases
ATGCGCGTTGCGGCGGAACGGGGCGTTCCTCAGAAGGAACGCCAGGAGGTGGCAGCCTCCGATGCGACTCTGGCTCCGGC
CGCGCAGACGGACGGATCAGCTGGCGCCGTGATTCGGGACGCAAGCGAGGACGCTGCAGCAGGCGCTGGCGTTGCCACAG
GCAAGACGCCGGCGCGCCCTGCTCCCAATCGCCCCTCGCCCGCCAAGGCAGCCGCCAGCAAATCCGCGCTGGCCAATCTC
ACCGACTGGGACGCCGCGCGCATCTTCCTCGAGGTGGTCAGGGCCGGCAGCTTCCGCTCGGCGGCCGAGCGGCTCACGCT
CTCGATCAATGCGGTACGGCGGCGCATCGATGATTTCGAGCGGCAGATCGGCGCGACCCTGTTCACGCGCGACGTTCATG
GCGCACGGCTCACCGACGAGGGCGCGCTGGTGGTGTCGGCGGTGGAACGCATGGAGGCCGCGTCCTTCGAGTTGCTCCGC
GCCGGCGACGGTCTCGCCAGCGCCGCCTCCGGCGAGGTCCGCGTCGCCGTGACGGAGGGGCTCGGCACATTCTGGCTGGC
GCCGCGGCTGGTCGAGTTTCAGCAGAACTTCCCGAACGTGAATGTCGACCTGTATTGCGCGATGCGCTCGGCCGACGTGT
CGCGTCACGAGGCCGACGTCGCCATCCATCTGTCGCGGCCTGCGGCGCTCGATGTCAAGCTGGTCCGGCTCGGCCGCATG
CACCTGATGTGCTTTGCCAGCGAGAAATATCTCGAAACGTATGGCGTTCCGAAGTCGATTGACGAGCTGGTGAAACATCG
CTTGGTTCTGCAAGTAGCAGATGAAGCGGCAGCCAACACAGCTTTCGCGACCATCTTCCCCGGCTATGAGCAGCGGGACC
TGATCGCGATGACCACCAACGTTTCCAGTGCCAACTACTGGGCTGTCGCCCACGGGGCTGGTATTGGGGTATTCCCAACC
TATGCGAGTGCTCTGGGCGGGAAGATCGTACCCCTCGAAGTTGATCTGAAGTGGTCCTACGATATCTGGCTGTCATACCA
CGCCACCACCGGACGCATCCCCAGGGTGCGGCACATGATCGACTGGTTGGTGGAGGCCTTTAACCCTGGCAAATACCCCT
GGTTTAAAGACGAATTCATACATCCACAGCAACTTAAAACAGTATATATGGGTGAACCCCTGACCCATTTATTCGGGGGA
TTTCCGATGGAAGGACGGTAA

Upstream 100 bases:

>100_bases
CGACCCATCCACGACCCATGGCGTCCGGACTTTCCAAAGCGCCATGTCCCGTAGTTTCCGTAGTTTATCGGTAGCACTCT
AGCAGGCGGAGAGAGCTTGT

Downstream 100 bases:

>100_bases
AATCAGTATGAACAAGTCAGCGGCTAAGAAGATGAAGCAGCGCAGTGCCGGCAAGCCCGACATCGAGCTTGGCAAGCGCA
TTCGCCTGCGGCGTGTGGAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MRVAAERGVPQKERQEVAASDATLAPAAQTDGSAGAVIRDASEDAAAGAGVATGKTPARPAPNRPSPAKAAASKSALANL
TDWDAARIFLEVVRAGSFRSAAERLTLSINAVRRRIDDFERQIGATLFTRDVHGARLTDEGALVVSAVERMEAASFELLR
AGDGLASAASGEVRVAVTEGLGTFWLAPRLVEFQQNFPNVNVDLYCAMRSADVSRHEADVAIHLSRPAALDVKLVRLGRM
HLMCFASEKYLETYGVPKSIDELVKHRLVLQVADEAAANTAFATIFPGYEQRDLIAMTTNVSSANYWAVAHGAGIGVFPT
YASALGGKIVPLEVDLKWSYDIWLSYHATTGRIPRVRHMIDWLVEAFNPGKYPWFKDEFIHPQQLKTVYMGEPLTHLFGG
FPMEGR

Sequences:

>Translated_406_residues
MRVAAERGVPQKERQEVAASDATLAPAAQTDGSAGAVIRDASEDAAAGAGVATGKTPARPAPNRPSPAKAAASKSALANL
TDWDAARIFLEVVRAGSFRSAAERLTLSINAVRRRIDDFERQIGATLFTRDVHGARLTDEGALVVSAVERMEAASFELLR
AGDGLASAASGEVRVAVTEGLGTFWLAPRLVEFQQNFPNVNVDLYCAMRSADVSRHEADVAIHLSRPAALDVKLVRLGRM
HLMCFASEKYLETYGVPKSIDELVKHRLVLQVADEAAANTAFATIFPGYEQRDLIAMTTNVSSANYWAVAHGAGIGVFPT
YASALGGKIVPLEVDLKWSYDIWLSYHATTGRIPRVRHMIDWLVEAFNPGKYPWFKDEFIHPQQLKTVYMGEPLTHLFGG
FPMEGR
>Mature_406_residues
MRVAAERGVPQKERQEVAASDATLAPAAQTDGSAGAVIRDASEDAAAGAGVATGKTPARPAPNRPSPAKAAASKSALANL
TDWDAARIFLEVVRAGSFRSAAERLTLSINAVRRRIDDFERQIGATLFTRDVHGARLTDEGALVVSAVERMEAASFELLR
AGDGLASAASGEVRVAVTEGLGTFWLAPRLVEFQQNFPNVNVDLYCAMRSADVSRHEADVAIHLSRPAALDVKLVRLGRM
HLMCFASEKYLETYGVPKSIDELVKHRLVLQVADEAAANTAFATIFPGYEQRDLIAMTTNVSSANYWAVAHGAGIGVFPT
YASALGGKIVPLEVDLKWSYDIWLSYHATTGRIPRVRHMIDWLVEAFNPGKYPWFKDEFIHPQQLKTVYMGEPLTHLFGG
FPMEGR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=242, Percent_Identity=29.7520661157025, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786401, Length=287, Percent_Identity=25.4355400696864, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1789440, Length=300, Percent_Identity=24.6666666666667, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1789639, Length=181, Percent_Identity=24.3093922651934, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=196, Percent_Identity=25.5102040816327, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789173, Length=186, Percent_Identity=27.9569892473118, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 44092; Mature: 44092

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAAERGVPQKERQEVAASDATLAPAAQTDGSAGAVIRDASEDAAAGAGVATGKTPARP
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCC
APNRPSPAKAAASKSALANLTDWDAARIFLEVVRAGSFRSAAERLTLSINAVRRRIDDFE
CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHEEEHHHHHHHHHHHH
RQIGATLFTRDVHGARLTDEGALVVSAVERMEAASFELLRAGDGLASAASGEVRVAVTEG
HHHCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
LGTFWLAPRLVEFQQNFPNVNVDLYCAMRSADVSRHEADVAIHLSRPAALDVKLVRLGRM
CCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHCCE
HLMCFASEKYLETYGVPKSIDELVKHRLVLQVADEAAANTAFATIFPGYEQRDLIAMTTN
EEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEC
VSSANYWAVAHGAGIGVFPTYASALGGKIVPLEVDLKWSYDIWLSYHATTGRIPRVRHMI
CCCCCEEEEEECCCCCCHHHHHHHHCCEEEEEEEEEEEEEEEEEEEECCCCCCHHHHHHH
DWLVEAFNPGKYPWFKDEFIHPQQLKTVYMGEPLTHLFGGFPMEGR
HHHHHHCCCCCCCCCCCCCCCHHHHCEEECCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MRVAAERGVPQKERQEVAASDATLAPAAQTDGSAGAVIRDASEDAAAGAGVATGKTPARP
CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCHHCCCCCCCCCCCCCC
APNRPSPAKAAASKSALANLTDWDAARIFLEVVRAGSFRSAAERLTLSINAVRRRIDDFE
CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHEEEHHHHHHHHHHHH
RQIGATLFTRDVHGARLTDEGALVVSAVERMEAASFELLRAGDGLASAASGEVRVAVTEG
HHHCCEEEEECCCCCEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECC
LGTFWLAPRLVEFQQNFPNVNVDLYCAMRSADVSRHEADVAIHLSRPAALDVKLVRLGRM
CCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCCCCHHHHHHCCE
HLMCFASEKYLETYGVPKSIDELVKHRLVLQVADEAAANTAFATIFPGYEQRDLIAMTTN
EEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEC
VSSANYWAVAHGAGIGVFPTYASALGGKIVPLEVDLKWSYDIWLSYHATTGRIPRVRHMI
CCCCCEEEEEECCCCCCHHHHHHHHCCEEEEEEEEEEEEEEEEEEEECCCCCCHHHHHHH
DWLVEAFNPGKYPWFKDEFIHPQQLKTVYMGEPLTHLFGGFPMEGR
HHHHHHCCCCCCCCCCCCCCCHHHHCEEECCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]