| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is rbcL [H]
Identifier: 146339298
GI number: 146339298
Start: 2423346
End: 2424785
Strand: Direct
Name: rbcL [H]
Synonym: BRADO2274
Alternate gene names: 146339298
Gene position: 2423346-2424785 (Clockwise)
Preceding gene: 146339296
Following gene: 146339299
Centisome position: 32.5
GC content: 63.19
Gene sequence:
>1440_bases ATGGCAGAGAAGAGCTATCAGGCGGGCGTCAAGGAGTATCGCAAGACGTATTGGACGCCGGAATACGTTCCGCTCGACAC CGATCTTCTCGCGGTCTTCAAGATCGTCGCACAGGCCGGCGTGCCACGCGAGGAAGCCGCGGCGGCAGTCGCCGCGGAGT CGTCTACGGGAACGTGGACCACGGTTTGGACAGACCTGCTGACCGATCTCGACTATTACAAGGGCCGCGCCTATCGCATC GAGCCGGTTCCCGGTGACGACAACGCGTTCTATGCCTTCATTGCCTATCCTATCGATCTGTTCGAGGAAGGTTCGGTCGT GAACGTGCTGACCTCGTTGGTCGGCAACGTGTTCGGGTTCAAGGCCGTGCGCAGCCTGCGACTGGAGGATATCCGCTTTC CGCTGGCCTATGTGAAGACCTGCGGCGGGCCGCCGAACGGCATTCAGCTCGAGCGCGACCGGCTCAACAAATATGGCCGT CCGCTGCTCGGCTGCACCATCAAGCCGAAGCTCGGTCTGTCGGCGAAGAACTATGGTCGTGCCGTCTATGAGTGTCTGCG CGGCGGCCTCGATTTCACCAAGGACGACGAGAACATCAATAGCCAGCCTTTCATGCGCTGGCAGCACCGTTTCGAATTCG TCATGGAGGCGGTGCACAAGGCGACGTCTGAAACTGGCGAGCGCAAGGGGCACTATCTCAACGTCACCGCGCCGACTCCG GAGGAGATGTACAAGCGCGCCGAGTTCGCCAAGTCGCTGGGCGCGCCGATCATCATGCACGATTTCCTGACGGCCGGCTT CACCGCAAACACCGGTCTTGCGAACTGGTGCCGCGAGAACGGCATGCTGTTGCACATCCACCGCGCCATGCATGCCGTGC TCGATCGCAATCCGATGCACGGCATCCATTTCCGCGTGCTGACCAAGTGCCTCCGATTGTCGGGCGGTGACCACCTGCAT TCCGGCACGGTGGTCGGCAAGCTCGAAGGCGATCGCGAGGCGACGATCGGCTGGGTCGACCTGATGCGCGAGCCCTTCGT TCCAGAGAACCGCGCGCGCGGCATCTTCTTCGATCAGGATTGGGGCGCGATGCCCGGCGTGATGCCGGTGGCCTCGGGTG GGATTCACGTCTGGCATATGCCGGCGCTCACCGCGATCTTCGGCGACGATGCCTGCTTCCAGTTCGGCGGCGGCACGCTC GGCCATCCCTGGGGCAATGCTGCCGGCGCACATGCCAACCGTGTCGCGCTTGAAGCCTGTGTCGAGGCGCGCAACCAGGG CAGGCCGGTCGAGCGCGAGGGCCGCGAGATCCTCACCGAGGCCGCGCAGCATTCGCCCGAGCTGAAGATCGCGATGGAGA CCTGGAAGGAGATCAAGTTCGAGTTCGACGTGGTCGACAAGCTCGACACCGGCCCGATGCTCCGGGTCGTCAACGCCTGA
Upstream 100 bases:
>100_bases AATCATCAAGAACGCAAATGCCAGCATAAGAACCTCTGAATTTTCATTCGACGCAGCTGATGTTTTTCTCCTCCCAACGA ACGACGACAGGGAGGTTGGT
Downstream 100 bases:
>100_bases GGCGGCCGCGGCCGCATCTCTCGACCATCATCGTCGCAATCAACGCGTCAGCCGAACGCCAGGGAATAGCCATGTCCGAA GCCGTCGCCTACAAATCCGC
Product: ribulose bisophosphate carboxylase
Products: NA
Alternate protein names: RuBisCO large subunit 2 [H]
Number of amino acids: Translated: 479; Mature: 478
Protein sequence:
>479_residues MAEKSYQAGVKEYRKTYWTPEYVPLDTDLLAVFKIVAQAGVPREEAAAAVAAESSTGTWTTVWTDLLTDLDYYKGRAYRI EPVPGDDNAFYAFIAYPIDLFEEGSVVNVLTSLVGNVFGFKAVRSLRLEDIRFPLAYVKTCGGPPNGIQLERDRLNKYGR PLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWQHRFEFVMEAVHKATSETGERKGHYLNVTAPTP EEMYKRAEFAKSLGAPIIMHDFLTAGFTANTGLANWCRENGMLLHIHRAMHAVLDRNPMHGIHFRVLTKCLRLSGGDHLH SGTVVGKLEGDREATIGWVDLMREPFVPENRARGIFFDQDWGAMPGVMPVASGGIHVWHMPALTAIFGDDACFQFGGGTL GHPWGNAAGAHANRVALEACVEARNQGRPVEREGREILTEAAQHSPELKIAMETWKEIKFEFDVVDKLDTGPMLRVVNA
Sequences:
>Translated_479_residues MAEKSYQAGVKEYRKTYWTPEYVPLDTDLLAVFKIVAQAGVPREEAAAAVAAESSTGTWTTVWTDLLTDLDYYKGRAYRI EPVPGDDNAFYAFIAYPIDLFEEGSVVNVLTSLVGNVFGFKAVRSLRLEDIRFPLAYVKTCGGPPNGIQLERDRLNKYGR PLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWQHRFEFVMEAVHKATSETGERKGHYLNVTAPTP EEMYKRAEFAKSLGAPIIMHDFLTAGFTANTGLANWCRENGMLLHIHRAMHAVLDRNPMHGIHFRVLTKCLRLSGGDHLH SGTVVGKLEGDREATIGWVDLMREPFVPENRARGIFFDQDWGAMPGVMPVASGGIHVWHMPALTAIFGDDACFQFGGGTL GHPWGNAAGAHANRVALEACVEARNQGRPVEREGREILTEAAQHSPELKIAMETWKEIKFEFDVVDKLDTGPMLRVVNA >Mature_478_residues AEKSYQAGVKEYRKTYWTPEYVPLDTDLLAVFKIVAQAGVPREEAAAAVAAESSTGTWTTVWTDLLTDLDYYKGRAYRIE PVPGDDNAFYAFIAYPIDLFEEGSVVNVLTSLVGNVFGFKAVRSLRLEDIRFPLAYVKTCGGPPNGIQLERDRLNKYGRP LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWQHRFEFVMEAVHKATSETGERKGHYLNVTAPTPE EMYKRAEFAKSLGAPIIMHDFLTAGFTANTGLANWCRENGMLLHIHRAMHAVLDRNPMHGIHFRVLTKCLRLSGGDHLHS GTVVGKLEGDREATIGWVDLMREPFVPENRARGIFFDQDWGAMPGVMPVASGGIHVWHMPALTAIFGDDACFQFGGGTLG HPWGNAAGAHANRVALEACVEARNQGRPVEREGREILTEAAQHSPELKIAMETWKEIKFEFDVVDKLDTGPMLRVVNA
Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the
COG id: COG1850
COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020878 - InterPro: IPR020888 - InterPro: IPR000685 - InterPro: IPR017443 - InterPro: IPR017444 [H]
Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]
EC number: =4.1.1.39 [H]
Molecular weight: Translated: 53334; Mature: 53203
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS00157 RUBISCO_LARGE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEKSYQAGVKEYRKTYWTPEYVPLDTDLLAVFKIVAQAGVPREEAAAAVAAESSTGTWT CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCHH TVWTDLLTDLDYYKGRAYRIEPVPGDDNAFYAFIAYPIDLFEEGSVVNVLTSLVGNVFGF HHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHHH KAVRSLRLEDIRFPLAYVKTCGGPPNGIQLERDRLNKYGRPLLGCTIKPKLGLSAKNYGR HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHH AVYECLRGGLDFTKDDENINSQPFMRWQHRFEFVMEAVHKATSETGERKGHYLNVTAPTP HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCH EEMYKRAEFAKSLGAPIIMHDFLTAGFTANTGLANWCRENGMLLHIHRAMHAVLDRNPMH HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHCCCCCC GIHFRVLTKCLRLSGGDHLHSGTVVGKLEGDREATIGWVDLMREPFVPENRARGIFFDQD CHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEECC WGAMPGVMPVASGGIHVWHMPALTAIFGDDACFQFGGGTLGHPWGNAAGAHANRVALEAC CCCCCCCCEECCCCEEEEEHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCHHHHHHHHH VEARNQGRPVEREGREILTEAAQHSPELKIAMETWKEIKFEFDVVDKLDTGPMLRVVNA HHHHHCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHEEEEEHHCCCCCCCCEEEECC >Mature Secondary Structure AEKSYQAGVKEYRKTYWTPEYVPLDTDLLAVFKIVAQAGVPREEAAAAVAAESSTGTWT CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHEECCCCCCHH TVWTDLLTDLDYYKGRAYRIEPVPGDDNAFYAFIAYPIDLFEEGSVVNVLTSLVGNVFGF HHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCHHHHCCCCHHHHHHHHHHHHHHH KAVRSLRLEDIRFPLAYVKTCGGPPNGIQLERDRLNKYGRPLLGCTIKPKLGLSAKNYGR HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHH AVYECLRGGLDFTKDDENINSQPFMRWQHRFEFVMEAVHKATSETGERKGHYLNVTAPTP HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCH EEMYKRAEFAKSLGAPIIMHDFLTAGFTANTGLANWCRENGMLLHIHRAMHAVLDRNPMH HHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHCCEEEEHHHHHHHHHCCCCCC GIHFRVLTKCLRLSGGDHLHSGTVVGKLEGDREATIGWVDLMREPFVPENRARGIFFDQD CHHHHHHHHHHHCCCCCEECCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEEECC WGAMPGVMPVASGGIHVWHMPALTAIFGDDACFQFGGGTLGHPWGNAAGAHANRVALEAC CCCCCCCCEECCCCEEEEEHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCCHHHHHHHHH VEARNQGRPVEREGREILTEAAQHSPELKIAMETWKEIKFEFDVVDKLDTGPMLRVVNA HHHHHCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHHHHEEEEEHHCCCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA