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The map label for this gene is cbbR [H]

Identifier: 146339297

GI number: 146339297

Start: 2422311

End: 2423195

Strand: Reverse

Name: cbbR [H]

Synonym: BRADO2273

Alternate gene names: 146339297

Gene position: 2423195-2422311 (Counterclockwise)

Preceding gene: 146339310

Following gene: 146339287

Centisome position: 32.5

GC content: 64.52

Gene sequence:

>885_bases
ATGCACATTACTCTGCAGCATCTGCGAATCTTCGAAGCGGTGAGCCGTCATGGCGCGATCACGCGCGCGGCCTCCGAACT
GCATCTGACGCAGCCGGCCGTTTCGATGCAGTGCAAACAACTCGAAGATCAGATCGGGCTGCCGCTGATCGAGCAGATCG
GCAAGAAGCTGCAGCTCACGGAAGCCGGGCGCGAGTTGCTTGTTCACGCGCAACGCATCGCGGCACAGATGACCGAGCTC
AAGGCTGCGATGGATCAGTTCCGTGGGCTGGAGCGCGGCGTGTTGCGGCTTGCAGTCGTATCCAGCGCCAACTACTTCCT
GCCGCCGGTGATCGCCGCATTCACGCAGCGTCACCCCGGCGTCCGCGTCAGCCTGCGGGTGGTGAATCGCGACGCCGTGC
TCGCGGCCTTGGCCGACAATCAGACCGACCTCGCCATCACTGGTCAGCCACCTGACAGCGCCGACATCGTCAGCCATTAC
TTCATGGACAACCCATTGGTCGTGGTCGCGCCGCCGGGACATCCACAGGCGGGACGCGGTACGATCGACATCGCGGCGCT
GGCGGATGAGACGCTGGTGCTGCGCGAGCCCGGCTCGGGCACACGCGCAACCGTGGAGCGCTACCTCGCCGATCACAATG
TGACTTTCCGGCCGGGATGCGAGCTAAGTACGAACGAAGCCGTCAAGCAGGCCGTGCAGGCAGGCCTCGGCATCGGCATC
GTTCCCGCTCAGACCATCGAGCTCGAGGTCGAAACGGGACGGCTGGTGATCCTTCCCGTGGAAGGCTTTCCGCTGAACCG
GCGCTGGTTCATGTTGCACAGAAGGGACAAGCGCCTGTCCGGCGCCGCCGAGGCATTCCGCGACCTGCTCGTGCGCGAGA
GCTGA

Upstream 100 bases:

>100_bases
CGAATGAAAATTCAGAGGTTCTTATGCTGGCATTTGCGTTCTTGATGATTGCGCGATGCGTGCTATCGTCCGGCCGTCGA
GTGCAGCGCAAAGGCGTGGC

Downstream 100 bases:

>100_bases
ACAGACCAACTCCGTCGTAAAAAGTACCGATCGGTCGACGCGGAAAACGGCCACTCACGACGCCCGGCACCTTTCAGAAC
CACACATCGGCAGACTCGCC

Product: RuBisCO operon transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MHITLQHLRIFEAVSRHGAITRAASELHLTQPAVSMQCKQLEDQIGLPLIEQIGKKLQLTEAGRELLVHAQRIAAQMTEL
KAAMDQFRGLERGVLRLAVVSSANYFLPPVIAAFTQRHPGVRVSLRVVNRDAVLAALADNQTDLAITGQPPDSADIVSHY
FMDNPLVVVAPPGHPQAGRGTIDIAALADETLVLREPGSGTRATVERYLADHNVTFRPGCELSTNEAVKQAVQAGLGIGI
VPAQTIELEVETGRLVILPVEGFPLNRRWFMLHRRDKRLSGAAEAFRDLLVRES

Sequences:

>Translated_294_residues
MHITLQHLRIFEAVSRHGAITRAASELHLTQPAVSMQCKQLEDQIGLPLIEQIGKKLQLTEAGRELLVHAQRIAAQMTEL
KAAMDQFRGLERGVLRLAVVSSANYFLPPVIAAFTQRHPGVRVSLRVVNRDAVLAALADNQTDLAITGQPPDSADIVSHY
FMDNPLVVVAPPGHPQAGRGTIDIAALADETLVLREPGSGTRATVERYLADHNVTFRPGCELSTNEAVKQAVQAGLGIGI
VPAQTIELEVETGRLVILPVEGFPLNRRWFMLHRRDKRLSGAAEAFRDLLVRES
>Mature_294_residues
MHITLQHLRIFEAVSRHGAITRAASELHLTQPAVSMQCKQLEDQIGLPLIEQIGKKLQLTEAGRELLVHAQRIAAQMTEL
KAAMDQFRGLERGVLRLAVVSSANYFLPPVIAAFTQRHPGVRVSLRVVNRDAVLAALADNQTDLAITGQPPDSADIVSHY
FMDNPLVVVAPPGHPQAGRGTIDIAALADETLVLREPGSGTRATVERYLADHNVTFRPGCELSTNEAVKQAVQAGLGIGI
VPAQTIELEVETGRLVILPVEGFPLNRRWFMLHRRDKRLSGAAEAFRDLLVRES

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=35.9861591695502, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI157672245, Length=282, Percent_Identity=28.7234042553192, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI145693105, Length=293, Percent_Identity=26.2798634812287, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787879, Length=291, Percent_Identity=26.8041237113402, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI1790399, Length=263, Percent_Identity=26.9961977186312, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87082132, Length=265, Percent_Identity=27.5471698113208, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787530, Length=251, Percent_Identity=27.0916334661355, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789173, Length=289, Percent_Identity=30.1038062283737, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789204, Length=242, Percent_Identity=28.9256198347107, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1788887, Length=264, Percent_Identity=30.6818181818182, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=29, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=26.027397260274, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787601, Length=284, Percent_Identity=25, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788296, Length=243, Percent_Identity=26.7489711934156, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI87081904, Length=287, Percent_Identity=25.0871080139373, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI2367136, Length=240, Percent_Identity=27.9166666666667, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=280, Percent_Identity=25, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787806, Length=302, Percent_Identity=25.4966887417219, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788706, Length=259, Percent_Identity=25.4826254826255, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790262, Length=293, Percent_Identity=27.6450511945392, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789506, Length=201, Percent_Identity=28.3582089552239, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1788297, Length=243, Percent_Identity=24.2798353909465, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787949, Length=268, Percent_Identity=27.6119402985075, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI48994962, Length=163, Percent_Identity=30.6748466257669, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788626, Length=274, Percent_Identity=28.1021897810219, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32178; Mature: 32178

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHITLQHLRIFEAVSRHGAITRAASELHLTQPAVSMQCKQLEDQIGLPLIEQIGKKLQLT
CEEEHHHHHHHHHHHHCCCHHHHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHCCCEEHH
EAGRELLVHAQRIAAQMTELKAAMDQFRGLERGVLRLAVVSSANYFLPPVIAAFTQRHPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEECCCCCCHHHHHHHHHCCCCC
VRVSLRVVNRDAVLAALADNQTDLAITGQPPDSADIVSHYFMDNPLVVVAPPGHPQAGRG
EEEEEEEECCCEEEEEECCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCC
TIDIAALADETLVLREPGSGTRATVERYLADHNVTFRPGCELSTNEAVKQAVQAGLGIGI
CEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCEEE
VPAQTIELEVETGRLVILPVEGFPLNRRWFMLHRRDKRLSGAAEAFRDLLVRES
CCCEEEEEEEECCEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHITLQHLRIFEAVSRHGAITRAASELHLTQPAVSMQCKQLEDQIGLPLIEQIGKKLQLT
CEEEHHHHHHHHHHHHCCCHHHHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHCCCEEHH
EAGRELLVHAQRIAAQMTELKAAMDQFRGLERGVLRLAVVSSANYFLPPVIAAFTQRHPG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEEEEEECCCCCCHHHHHHHHHCCCCC
VRVSLRVVNRDAVLAALADNQTDLAITGQPPDSADIVSHYFMDNPLVVVAPPGHPQAGRG
EEEEEEEECCCEEEEEECCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCC
TIDIAALADETLVLREPGSGTRATVERYLADHNVTFRPGCELSTNEAVKQAVQAGLGIGI
CEEEEEECCCEEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHCCCEEE
VPAQTIELEVETGRLVILPVEGFPLNRRWFMLHRRDKRLSGAAEAFRDLLVRES
CCCEEEEEEEECCEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]