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The map label for this gene is xpsD [H]

Identifier: 146339226

GI number: 146339226

Start: 2323432

End: 2325768

Strand: Reverse

Name: xpsD [H]

Synonym: BRADO2191

Alternate gene names: 146339226

Gene position: 2325768-2323432 (Counterclockwise)

Preceding gene: 146339231

Following gene: 146339225

Centisome position: 31.19

GC content: 63.59

Gene sequence:

>2337_bases
GTGGCCGGAACATCACGCCGCATTGGCTTGTCAATTTGGCCCGCGCTCCTGTGCGTGCTGCTCGTTGGATGCAACACCGT
GTCCGGGGGGGCCGACCAGACCGACCTGCGAGACGTCGATGTGCTGGACAAGGTTCGCTCGCTCGATCTGCAGGCGCGAT
CGCCGAGCGAAGTCTCCCAGGCCAAGGTGGACACAGGCCGCCGCGGCAAGCCGATCATCTACACGCCAGATCCGGCGGAA
CGCGCGTCAGACGCATCGTACGAGCGGACGAGTTCGACCGTCAGTCGCGACAAGCTTGAGCTCAACTTCGAGAACGCGGC
GATCGCGTCGGTCGCGAAGATCGTGCTCGGCGACATGCTCGGAGTCGGCTATGTCGTCGACACGAGGGTTCAGGGAACGA
TCAGTCTGTCATCAGGGCGGCCGATCCCCAAATCCGATGTCCTGTTCGCGCTGGAAAGCGCGCTGCGCGTCGCCGGCATC
GCGCTGATCCGCGACAATGGCGCGTATCGTCTGATGCCGCAGGCGGACGCGGTCGGCACCGGAAATGTCGATACAGCCGA
TCGTACCGAGCCGGGCTACGGAATTTCCGTGGTCCCCGTCCTGAATGTCTCCGCGCAGATGCTCACCAAGCTGGTGGAGA
ATTTCGGCACTAAGCAGGGCATGCTCCGGGCCGACCCGAGCCGCAACCTCATCATCGTACAGGGCACTGGCAGCGAGCGG
CGGAACGCCGTGGATCTGCTGCTGAGCTTCGACATGGACTGGATGCGCGGCCAGTCGGTCGGCATTTTTCCTGTGCAGAA
CAGCAACCCCGAGCCGATCATCGCCGAGCTCGAAAAAATCATCGATTCCGGTGAAGGTGGCGTTTCACAACATGTCGTCA
GGTTCCATCCGATCGGACGCATGAACGCAATTCTCGCGGTCGCGCGCAAACCGGAGATCCTGCAGCGGATCGAAACCTGG
ATCGGCCGCCTAGACAATACCAATAACGCACGCTCGTCGATTCACGTCTACTATGTGAAGTATGGCGAGGCCCGTCAGAT
TGCACGCGCGCTCAACGAGATCTTCGGCAGCAGCACCGCGAGCGCCGCTTCGGTCGATAGCACCGGAGGCTCGATCGCGC
CCGGATCGGGCCTCGCTTCCAGCTCCAGCCCCATGAGCCGGCTGTCGGTCGGAACGCCAGGGCAGTCAGGGGGCGGGTAC
GGCTCAAGCGCGCGCACAGGGACCGCCGCGGGTGGTGGCGTTGACATGGGCAGCAATGCAGCCACCGGCACCGCGGCTCA
GGGCCAAGCGGGCAGCCTGTTCGATGGTCCGGCTGGAGCGAGCACCGGTGGCGCGGGCCGCGTCGGCGGCACGGGCTCCA
TCGGCGGCGTGCTCGAGGGTGTCCGCATCACCGCCGATTCCGTGAACAATTCGCTGCTGATCTATGCGAGCCAGGAGCAG
TACAGCATCGTCGAAAGAACCGTACGCCAACTGGACCGTCCACAGCGCCAAGTGGCGATCGAGGCGACGATTGCGGAGGT
TACGCTGACGGATGACCTTCAGTTCGGCGTGCAGTCCTACATCATGAGCCGTGATCTCGGCCTCAAACCCGACACCGGAT
CCTTCGGCGATGCGGCCTCCACGGCCCTCGCCACGGCAGGCAATGTCGTGCTGAACCGCGCCATTCCCGGCTTCAATTTC
CTGGTCGGGTCGGCCACCACGCCACGCCTCATCCTGAGCGCGCTCCACGCGGTGACCGACGTCAAGGTGCTCTCCAATCC
CTCTCTCGTCGTGATCGACAACCAGGTCGCCACCTTGCAGGTCGGCAACGAAATTCCGATCCAGACCGGAACCGCGACGG
TGCTCACGGGGAACAATACCGTTGCGAGCACCACCGACTATCGCAGCACCGGCATCATCCTGCGCGTGGTGCCGCGCATC
AACGCAAACGGCAACGTTCGGCTCGACGTCGAGCAGGAGATCAGCAACGCGTTGAACGGAACGAACGGTGGAAACGGTGC
GACCAACTCCCTGACCCCGACGGTTGCCACCCGCAAGCTGCGCAGCTCTGTTGCCGTGGCCAGCGGTCAGACCGTGCTGC
TTGCCGGACTAATCAGCGACACTCAGAACCGCACCCGAAACGGGATTCCCGGCATCGACCAGATCCCAGGCATCGGCGAT
CTGTTCTCACAAAGCGGCAATAACGTTCAGCGCACCGAACTTATCATCTTCATCCGCCCGCAGATCATTCGCGACGGCGT
CGACGCCAATTTTGTTGCCGAGGAGGTCCGCTCGAAGCTGAGGGGCTCACTCGGCAACGCCGAGAGCCGACAGGGGAGCG
CAACGAGGCTGCGCTGA

Upstream 100 bases:

>100_bases
CATACGACTGTCATAGACCATGGCTAAAAGCGGGCCATTCGGCCTCGCCGTCTGTGCTCAACGGCCGTCACTCATGGTAG
CGTAAGAGCAGAGGCGGACT

Downstream 100 bases:

>100_bases
TAGACGACTATTTGGGGTGAGGGTTAGATCATGCCGGGGACGCTGAGGTCTCTCCTGTTTTGTCTTGTCGCCATCTTCCT
TGTACCGCGAGATGGTCAAG

Product: putative general secretion pathway protein D signal peptide

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 778; Mature: 777

Protein sequence:

>778_residues
MAGTSRRIGLSIWPALLCVLLVGCNTVSGGADQTDLRDVDVLDKVRSLDLQARSPSEVSQAKVDTGRRGKPIIYTPDPAE
RASDASYERTSSTVSRDKLELNFENAAIASVAKIVLGDMLGVGYVVDTRVQGTISLSSGRPIPKSDVLFALESALRVAGI
ALIRDNGAYRLMPQADAVGTGNVDTADRTEPGYGISVVPVLNVSAQMLTKLVENFGTKQGMLRADPSRNLIIVQGTGSER
RNAVDLLLSFDMDWMRGQSVGIFPVQNSNPEPIIAELEKIIDSGEGGVSQHVVRFHPIGRMNAILAVARKPEILQRIETW
IGRLDNTNNARSSIHVYYVKYGEARQIARALNEIFGSSTASAASVDSTGGSIAPGSGLASSSSPMSRLSVGTPGQSGGGY
GSSARTGTAAGGGVDMGSNAATGTAAQGQAGSLFDGPAGASTGGAGRVGGTGSIGGVLEGVRITADSVNNSLLIYASQEQ
YSIVERTVRQLDRPQRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAASTALATAGNVVLNRAIPGFNF
LVGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQVGNEIPIQTGTATVLTGNNTVASTTDYRSTGIILRVVPRI
NANGNVRLDVEQEISNALNGTNGGNGATNSLTPTVATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGD
LFSQSGNNVQRTELIIFIRPQIIRDGVDANFVAEEVRSKLRGSLGNAESRQGSATRLR

Sequences:

>Translated_778_residues
MAGTSRRIGLSIWPALLCVLLVGCNTVSGGADQTDLRDVDVLDKVRSLDLQARSPSEVSQAKVDTGRRGKPIIYTPDPAE
RASDASYERTSSTVSRDKLELNFENAAIASVAKIVLGDMLGVGYVVDTRVQGTISLSSGRPIPKSDVLFALESALRVAGI
ALIRDNGAYRLMPQADAVGTGNVDTADRTEPGYGISVVPVLNVSAQMLTKLVENFGTKQGMLRADPSRNLIIVQGTGSER
RNAVDLLLSFDMDWMRGQSVGIFPVQNSNPEPIIAELEKIIDSGEGGVSQHVVRFHPIGRMNAILAVARKPEILQRIETW
IGRLDNTNNARSSIHVYYVKYGEARQIARALNEIFGSSTASAASVDSTGGSIAPGSGLASSSSPMSRLSVGTPGQSGGGY
GSSARTGTAAGGGVDMGSNAATGTAAQGQAGSLFDGPAGASTGGAGRVGGTGSIGGVLEGVRITADSVNNSLLIYASQEQ
YSIVERTVRQLDRPQRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAASTALATAGNVVLNRAIPGFNF
LVGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQVGNEIPIQTGTATVLTGNNTVASTTDYRSTGIILRVVPRI
NANGNVRLDVEQEISNALNGTNGGNGATNSLTPTVATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGD
LFSQSGNNVQRTELIIFIRPQIIRDGVDANFVAEEVRSKLRGSLGNAESRQGSATRLR
>Mature_777_residues
AGTSRRIGLSIWPALLCVLLVGCNTVSGGADQTDLRDVDVLDKVRSLDLQARSPSEVSQAKVDTGRRGKPIIYTPDPAER
ASDASYERTSSTVSRDKLELNFENAAIASVAKIVLGDMLGVGYVVDTRVQGTISLSSGRPIPKSDVLFALESALRVAGIA
LIRDNGAYRLMPQADAVGTGNVDTADRTEPGYGISVVPVLNVSAQMLTKLVENFGTKQGMLRADPSRNLIIVQGTGSERR
NAVDLLLSFDMDWMRGQSVGIFPVQNSNPEPIIAELEKIIDSGEGGVSQHVVRFHPIGRMNAILAVARKPEILQRIETWI
GRLDNTNNARSSIHVYYVKYGEARQIARALNEIFGSSTASAASVDSTGGSIAPGSGLASSSSPMSRLSVGTPGQSGGGYG
SSARTGTAAGGGVDMGSNAATGTAAQGQAGSLFDGPAGASTGGAGRVGGTGSIGGVLEGVRITADSVNNSLLIYASQEQY
SIVERTVRQLDRPQRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAASTALATAGNVVLNRAIPGFNFL
VGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQVGNEIPIQTGTATVLTGNNTVASTTDYRSTGIILRVVPRIN
ANGNVRLDVEQEISNALNGTNGGNGATNSLTPTVATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGDL
FSQSGNNVQRTELIIFIRPQIIRDGVDANFVAEEVRSKLRGSLGNAESRQGSATRLR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=660, Percent_Identity=25, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1789793, Length=282, Percent_Identity=24.822695035461, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 81290; Mature: 81158

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGTSRRIGLSIWPALLCVLLVGCNTVSGGADQTDLRDVDVLDKVRSLDLQARSPSEVSQ
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
AKVDTGRRGKPIIYTPDPAERASDASYERTSSTVSRDKLELNFENAAIASVAKIVLGDML
HHCCCCCCCCCEEECCCCHHHCCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHH
GVGYVVDTRVQGTISLSSGRPIPKSDVLFALESALRVAGIALIRDNGAYRLMPQADAVGT
CCCEEEECEEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCEEECCCCCCCCC
GNVDTADRTEPGYGISVVPVLNVSAQMLTKLVENFGTKQGMLRADPSRNLIIVQGTGSER
CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCCC
RNAVDLLLSFDMDWMRGQSVGIFPVQNSNPEPIIAELEKIIDSGEGGVSQHVVRFHPIGR
CHHEEEHEECCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHCEEEECCCCH
MNAILAVARKPEILQRIETWIGRLDNTNNARSSIHVYYVKYGEARQIARALNEIFGSSTA
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCC
SAASVDSTGGSIAPGSGLASSSSPMSRLSVGTPGQSGGGYGSSARTGTAAGGGVDMGSNA
CCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ATGTAAQGQAGSLFDGPAGASTGGAGRVGGTGSIGGVLEGVRITADSVNNSLLIYASQEQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEEEEECCHH
YSIVERTVRQLDRPQRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAAS
HHHHHHHHHHHCCCHHHEEEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
TALATAGNVVLNRAIPGFNFLVGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQ
HHHHHCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHEEEECCCCEEEECCCEEEEE
VGNEIPIQTGTATVLTGNNTVASTTDYRSTGIILRVVPRINANGNVRLDVEQEISNALNG
ECCCCCCCCCCEEEEECCCEEECCCCCCCCCEEEEEEECCCCCCCEEEEEHHHHHHHHCC
TNGGNGATNSLTPTVATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGD
CCCCCCCCCCCCHHHHHHHHHHHHEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCHH
LFSQSGNNVQRTELIIFIRPQIIRDGVDANFVAEEVRSKLRGSLGNAESRQGSATRLR
HHHCCCCCEEEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGTSRRIGLSIWPALLCVLLVGCNTVSGGADQTDLRDVDVLDKVRSLDLQARSPSEVSQ
CCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
AKVDTGRRGKPIIYTPDPAERASDASYERTSSTVSRDKLELNFENAAIASVAKIVLGDML
HHCCCCCCCCCEEECCCCHHHCCCCCHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHHH
GVGYVVDTRVQGTISLSSGRPIPKSDVLFALESALRVAGIALIRDNGAYRLMPQADAVGT
CCCEEEECEEEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEEEECCCCEEECCCCCCCCC
GNVDTADRTEPGYGISVVPVLNVSAQMLTKLVENFGTKQGMLRADPSRNLIIVQGTGSER
CCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCCC
RNAVDLLLSFDMDWMRGQSVGIFPVQNSNPEPIIAELEKIIDSGEGGVSQHVVRFHPIGR
CHHEEEHEECCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHCEEEECCCCH
MNAILAVARKPEILQRIETWIGRLDNTNNARSSIHVYYVKYGEARQIARALNEIFGSSTA
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCC
SAASVDSTGGSIAPGSGLASSSSPMSRLSVGTPGQSGGGYGSSARTGTAAGGGVDMGSNA
CCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
ATGTAAQGQAGSLFDGPAGASTGGAGRVGGTGSIGGVLEGVRITADSVNNSLLIYASQEQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCEEEEECCCCEEEEEECCHH
YSIVERTVRQLDRPQRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAAS
HHHHHHHHHHHCCCHHHEEEEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
TALATAGNVVLNRAIPGFNFLVGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQ
HHHHHCCCEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHEEEECCCCEEEECCCEEEEE
VGNEIPIQTGTATVLTGNNTVASTTDYRSTGIILRVVPRINANGNVRLDVEQEISNALNG
ECCCCCCCCCCEEEEECCCEEECCCCCCCCCEEEEEEECCCCCCCEEEEEHHHHHHHHCC
TNGGNGATNSLTPTVATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGD
CCCCCCCCCCCCHHHHHHHHHHHHEECCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCHH
LFSQSGNNVQRTELIIFIRPQIIRDGVDANFVAEEVRSKLRGSLGNAESRQGSATRLR
HHHCCCCCEEEEEEEEEECCHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]