Click here to switch to the map view.

The map label for this gene is hupC [H]

Identifier: 146338752

GI number: 146338752

Start: 1804741

End: 1805484

Strand: Direct

Name: hupC [H]

Synonym: BRADO1686

Alternate gene names: 146338752

Gene position: 1804741-1805484 (Clockwise)

Preceding gene: 146338751

Following gene: 146338753

Centisome position: 24.2

GC content: 62.37

Gene sequence:

>744_bases
ATGATGGATGCCGTCGCACGTCCCGCGGAGACCGAGACGAACCTCGCCGCGATCGCGGCCGATGCCGCCGGCGAGCACGC
CGTCGGCCGGCCCACGGTCTACGTCTACGAAGCCCCGGTGCGCATCTGCCACTGGGTCAACGCGCTCGCGATCGTCGTGC
TGATGGTCACCGGCTATCTGATCGGCACGCCGTTGCCGACGGTGGAAGGCGAGGCATCGGGCAGCTTCGTGATGGGCTAT
ATCCGGTTCACGCATTTCGCGGCCGGGCAGGTGCTGGCGGTGTTCTTCCTCGCCCGCATCCTTTGGGCCTTCGTCGGCAA
CCACCACTCGCGGCAGATCTTCTACATTCCGGTGCATCGCAAGCAGTTCTGGAAGGAGGTGCTGCACGAGATCCGCTGGT
ATGCGTTCATCGAGCGTGAGCCGAAAATGTATGTCGGTCACAACCCGCTGGCGCAGACGGCGATGTTCACCGGGTTCACG
GTATTCGTCGCCTTCATGATCGTCACGGGATTTGCGCTCTATTCGGAAGGCGAGGGCATCGACAGCTGGCAGCACAAACT
GTTCGGCTGGGTGTTCTCGATCTGGCCGAACAGCCAGGATGTGCACACATATCATCACCTCGGCATGTGGGCGCTGGTGA
TGTTCGTGATGGTGCACGTCTACGCGGCCATCCGCGAAGACATCATGTCGCGCCAGAGCATCATCTCCTCGATGGTCTCG
GGCGAGCGGCAGTTTCGCGAGTAG

Upstream 100 bases:

>100_bases
ATCCATTCGTTCGATCCATGCCTGGCGTGCTCGACGCACGTGATTAGCCCGGACGGCCAGGAAATGGCGACGGTCAAGGT
CAGGTAATGGGAGCAGCACG

Downstream 100 bases:

>100_bases
GGGAGCCACGCGATGGCCGAGAAGAAGCTCGATCGCATCCTGGTGCTCGGGATCGGCAACATCCTGTGGGCGGACGAGGG
GTTTGGCGTGCGCGTGGTGG

Product: Ni/Fe-hydrogenase, 1 b-type cytochrome subunit

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MMDAVARPAETETNLAAIAADAAGEHAVGRPTVYVYEAPVRICHWVNALAIVVLMVTGYLIGTPLPTVEGEASGSFVMGY
IRFTHFAAGQVLAVFFLARILWAFVGNHHSRQIFYIPVHRKQFWKEVLHEIRWYAFIEREPKMYVGHNPLAQTAMFTGFT
VFVAFMIVTGFALYSEGEGIDSWQHKLFGWVFSIWPNSQDVHTYHHLGMWALVMFVMVHVYAAIREDIMSRQSIISSMVS
GERQFRE

Sequences:

>Translated_247_residues
MMDAVARPAETETNLAAIAADAAGEHAVGRPTVYVYEAPVRICHWVNALAIVVLMVTGYLIGTPLPTVEGEASGSFVMGY
IRFTHFAAGQVLAVFFLARILWAFVGNHHSRQIFYIPVHRKQFWKEVLHEIRWYAFIEREPKMYVGHNPLAQTAMFTGFT
VFVAFMIVTGFALYSEGEGIDSWQHKLFGWVFSIWPNSQDVHTYHHLGMWALVMFVMVHVYAAIREDIMSRQSIISSMVS
GERQFRE
>Mature_247_residues
MMDAVARPAETETNLAAIAADAAGEHAVGRPTVYVYEAPVRICHWVNALAIVVLMVTGYLIGTPLPTVEGEASGSFVMGY
IRFTHFAAGQVLAVFFLARILWAFVGNHHSRQIFYIPVHRKQFWKEVLHEIRWYAFIEREPKMYVGHNPLAQTAMFTGFT
VFVAFMIVTGFALYSEGEGIDSWQHKLFGWVFSIWPNSQDVHTYHHLGMWALVMFVMVHVYAAIREDIMSRQSIISSMVS
GERQFRE

Specific function: B-type cytochrome involved in electron transfer from hydrogenase to oxygen [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=220, Percent_Identity=52.7272727272727, Blast_Score=225, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 28106; Mature: 28106

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS00882 NI_HGENASE_CYTB_1 ; PS00883 NI_HGENASE_CYTB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMDAVARPAETETNLAAIAADAAGEHAVGRPTVYVYEAPVRICHWVNALAIVVLMVTGYL
CCCCCCCCCCCCCCHHHEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
IGTPLPTVEGEASGSFVMGYIRFTHFAAGQVLAVFFLARILWAFVGNHHSRQIFYIPVHR
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHH
KQFWKEVLHEIRWYAFIEREPKMYVGHNPLAQTAMFTGFTVFVAFMIVTGFALYSEGEGI
HHHHHHHHHHHHHHHHEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DSWQHKLFGWVFSIWPNSQDVHTYHHLGMWALVMFVMVHVYAAIREDIMSRQSIISSMVS
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GERQFRE
HHHHHCC
>Mature Secondary Structure
MMDAVARPAETETNLAAIAADAAGEHAVGRPTVYVYEAPVRICHWVNALAIVVLMVTGYL
CCCCCCCCCCCCCCHHHEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHH
IGTPLPTVEGEASGSFVMGYIRFTHFAAGQVLAVFFLARILWAFVGNHHSRQIFYIPVHR
HCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHH
KQFWKEVLHEIRWYAFIEREPKMYVGHNPLAQTAMFTGFTVFVAFMIVTGFALYSEGEGI
HHHHHHHHHHHHHHHHEECCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
DSWQHKLFGWVFSIWPNSQDVHTYHHLGMWALVMFVMVHVYAAIREDIMSRQSIISSMVS
CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GERQFRE
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8230232; 8163174; 12597275; 3054886 [H]