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The map label for this gene is cbbS [H]

Identifier: 146338727

GI number: 146338727

Start: 1779148

End: 1779567

Strand: Direct

Name: cbbS [H]

Synonym: BRADO1660

Alternate gene names: 146338727

Gene position: 1779148-1779567 (Clockwise)

Preceding gene: 146338726

Following gene: 146338728

Centisome position: 23.86

GC content: 62.14

Gene sequence:

>420_bases
ATGCGCGTGACCCAAGGCTGCTTTTCCTTCCTGCCCGATCTGACCGATGATCAGATCGCGGCCCAGATCCAGTACTGCCT
CGAAAAAGGCTGGGCAGTGAACATCGAGTTCACCGACGATCCGCATCCCCGCAACACCTATTGGGAGATGTGGGGCCTGC
CGATGTTCGACCTGCGCGATGCCGCCGGCATCATGCGTGAGCTCGCCGAATGCCGGAAGATCTATGGCGACCGCTACATC
CGCATCTCGGCGTTCGACTCCAGCCATGGCTGGGAATCGACGCGGCTGTCCTTCATCGTGAACCGGCCGAAGACTGAGCC
GGGTTTCCGGCTCGATCGCCAGGAAACCGTCGGCCGCAATCTGCGTTACTCGACGCGGTCCTACGCGGCCGAGCGCCCTG
AGGGCGAGCGCTACTCATAA

Upstream 100 bases:

>100_bases
CGTCCCGACCGTCACCCCCGCGGCCTAAACCCCATTCGATTCGTCGCTGGGCGGGCCGGAGACCGGCTCGCGTGTCGCAG
CGAAATCAGGAGACATTCCC

Downstream 100 bases:

>100_bases
CGTCAGCCGGTGCTGAAGTCCCCGCCAGCGCGGTGGGACTTCAGCGCCGGCTCCGCCGCAACAATAAAATTCAATGAGAC
GGCGACCCCTGCTTGCCGGA

Product: ribulose bisphosphate carboxylase small chain

Products: NA

Alternate protein names: RuBisCO small subunit [H]

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MRVTQGCFSFLPDLTDDQIAAQIQYCLEKGWAVNIEFTDDPHPRNTYWEMWGLPMFDLRDAAGIMRELAECRKIYGDRYI
RISAFDSSHGWESTRLSFIVNRPKTEPGFRLDRQETVGRNLRYSTRSYAAERPEGERYS

Sequences:

>Translated_139_residues
MRVTQGCFSFLPDLTDDQIAAQIQYCLEKGWAVNIEFTDDPHPRNTYWEMWGLPMFDLRDAAGIMRELAECRKIYGDRYI
RISAFDSSHGWESTRLSFIVNRPKTEPGFRLDRQETVGRNLRYSTRSYAAERPEGERYS
>Mature_139_residues
MRVTQGCFSFLPDLTDDQIAAQIQYCLEKGWAVNIEFTDDPHPRNTYWEMWGLPMFDLRDAAGIMRELAECRKIYGDRYI
RISAFDSSHGWESTRLSFIVNRPKTEPGFRLDRQETVGRNLRYSTRSYAAERPEGERYS

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG4451

COG function: function code C; Ribulose bisphosphate carboxylase small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO small chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000894 [H]

Pfam domain/function: PF00101 RuBisCO_small [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 16341; Mature: 16341

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00283 SOYBEAN_KUNITZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVTQGCFSFLPDLTDDQIAAQIQYCLEKGWAVNIEFTDDPHPRNTYWEMWGLPMFDLRD
CCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHCCCCCHHHHHH
AAGIMRELAECRKIYGDRYIRISAFDSSHGWESTRLSFIVNRPKTEPGFRLDRQETVGRN
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEECCHHHHCCC
LRYSTRSYAAERPEGERYS
CCCCHHHHHCCCCCCCCCC
>Mature Secondary Structure
MRVTQGCFSFLPDLTDDQIAAQIQYCLEKGWAVNIEFTDDPHPRNTYWEMWGLPMFDLRD
CCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHCCCCCHHHHHH
AAGIMRELAECRKIYGDRYIRISAFDSSHGWESTRLSFIVNRPKTEPGFRLDRQETVGRN
HHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEECCHHHHCCC
LRYSTRSYAAERPEGERYS
CCCCHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]