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The map label for this gene is lhaA

Identifier: 146338711

GI number: 146338711

Start: 1761956

End: 1763386

Strand: Direct

Name: lhaA

Synonym: BRADO1644

Alternate gene names: NA

Gene position: 1761956-1763386 (Clockwise)

Preceding gene: 146338710

Following gene: 146338712

Centisome position: 23.63

GC content: 68.13

Gene sequence:

>1431_bases
ATGAGCACGCGCGCGCCATCGTTCCTGCAACTGTGGACGCGGCTGTCGTCGCGCTATCTGCCGTTTGCGGATGCCGCCTC
GACCGAGCTGCCGCTGTCGCGCCTGATGCGGCTGTCGCTGTTCCAGGTGTCGATCGGCATTTCTGTAGTGCTGCTCAACG
GCACGCTCAACCGCGTCATGATCGTCGAGCTCGGCGTGCCCTCCTGGCTGGTCGCGACGATGGTGGCGCTGCCGCTGGTG
TTCGCACCGCTGCGCGTGCTGATCGGCTTCAAGTCCGACCATCACCGCTCCGTGCTCGGCTGGCGCCGTGTACCGTATAT
CTGGATGGGTACCCTGCTGCAGTTCGGCGGCCTCGCCATCATGCCGTTCGCGCTGCTGGTGCTGTCGGCCAGCGACTCGC
CAGGACAAGTGATTGCCGGGCGCATCGGCGCAGCGCTGGCCTTCCTCTTGGTTGGTGCCGGCCTGCACACGACGCAGACC
GCCGGCCTGTCACTTGCGACCGACATCGCGCCGGAGCACTCGCGCCCACGCGTTGTCGCCTTCCTCTATGTGATGCTGAT
GTTCGGCATGATGGCGAGCGCGCTGACTTTCGGCGGCGTCCTGGCCGATTTCAGCGAGATGCGGCTGATCCAGGTGATCC
AGGGCGCGGCGCTGACCGAGATGGTGCTCAACGTCATCGCGCTGTGGAAGCAGGAGGCGCGTGATCCCTCGCGCACATCG
GCGAGCCGCGAGCGGCCGCGCTTCGGCGATTCCTGGCGGCAGTTCCGCGAGGCCGGCGGCTCGATGCGCGTGCTGGTCGC
GGTCGGGCTCGGCACCGCCGGCTTCACGATGCAGGACATCCTGCTCGAGCCATATGGCGCGGAGATCCTGCATCTCACCG
TCGGCGAAACGACCGCGCTGACGGCCTTGTTCGCGGCGGGCACGCTCGCCGGCTTCGGCCTCTCCGCGCGCCGTCTGGGC
AAGGGCTCCGATCCCTACCGCATCGCCGCGCTCGGCGGGCTCGTGGGCCTGTTCGCCTTCTCAGCCGTCATCTTCTCGGC
CCCGTTGGCCTCGCCGCTGGTGTTCAGGATCGGCACGACGCTCATCGGCTTCGGCGGCGGTCTGTTCGCGGTGGGCACGC
TGACGGCTGCGATGGCTTTGGTGCAGAACGGCGAGAGCGGCCTTGCGCTCGGCGCCTGGGGCGCGGTGCAGGCGACGGCG
GCAGGAGTTGCCATCGCTGGCGGCGGTGCCATTCGCGATGTGATGTCACAACTCGCGATGGACGGCCGCCTTGGCGTTGC
GCTCGCGGGGCCGGCGACCGGCTACAGCATCGTCTACCACGTCGAGATCGCGCTGCTCTTCGTCACGCTGGCGGTTATCG
GGCCGCTGGTGCGGCGGCGGGCGGCGGAGCCGCAGCAATTACAATTCGGAATCGCGGAATTTCCAGGTTAG

Upstream 100 bases:

>100_bases
TGATCGCTGAAAATCACGATCTCGCCGATTGGCGCTGCGCCCGCAGCTGCCGCATCGCCAACGGCTTCTACATCTCCCAG
GCGCTGGAGCTCCGCCCGTC

Downstream 100 bases:

>100_bases
CCCAGTCGGGGAGGAAGCCATGACGTCTTTCACGAGCTACATCGATGTCGCACAGGTGGTGCTTTACGGATTCTGGATAT
TCTTCGCAGCCCTGATCTTC

Product: photosynthetic complex (LH1) assembly protein LhaA

Products: NA

Alternate protein names: ORF477; Protein F1696 [H]

Number of amino acids: Translated: 476; Mature: 475

Protein sequence:

>476_residues
MSTRAPSFLQLWTRLSSRYLPFADAASTELPLSRLMRLSLFQVSIGISVVLLNGTLNRVMIVELGVPSWLVATMVALPLV
FAPLRVLIGFKSDHHRSVLGWRRVPYIWMGTLLQFGGLAIMPFALLVLSASDSPGQVIAGRIGAALAFLLVGAGLHTTQT
AGLSLATDIAPEHSRPRVVAFLYVMLMFGMMASALTFGGVLADFSEMRLIQVIQGAALTEMVLNVIALWKQEARDPSRTS
ASRERPRFGDSWRQFREAGGSMRVLVAVGLGTAGFTMQDILLEPYGAEILHLTVGETTALTALFAAGTLAGFGLSARRLG
KGSDPYRIAALGGLVGLFAFSAVIFSAPLASPLVFRIGTTLIGFGGGLFAVGTLTAAMALVQNGESGLALGAWGAVQATA
AGVAIAGGGAIRDVMSQLAMDGRLGVALAGPATGYSIVYHVEIALLFVTLAVIGPLVRRRAAEPQQLQFGIAEFPG

Sequences:

>Translated_476_residues
MSTRAPSFLQLWTRLSSRYLPFADAASTELPLSRLMRLSLFQVSIGISVVLLNGTLNRVMIVELGVPSWLVATMVALPLV
FAPLRVLIGFKSDHHRSVLGWRRVPYIWMGTLLQFGGLAIMPFALLVLSASDSPGQVIAGRIGAALAFLLVGAGLHTTQT
AGLSLATDIAPEHSRPRVVAFLYVMLMFGMMASALTFGGVLADFSEMRLIQVIQGAALTEMVLNVIALWKQEARDPSRTS
ASRERPRFGDSWRQFREAGGSMRVLVAVGLGTAGFTMQDILLEPYGAEILHLTVGETTALTALFAAGTLAGFGLSARRLG
KGSDPYRIAALGGLVGLFAFSAVIFSAPLASPLVFRIGTTLIGFGGGLFAVGTLTAAMALVQNGESGLALGAWGAVQATA
AGVAIAGGGAIRDVMSQLAMDGRLGVALAGPATGYSIVYHVEIALLFVTLAVIGPLVRRRAAEPQQLQFGIAEFPG
>Mature_475_residues
STRAPSFLQLWTRLSSRYLPFADAASTELPLSRLMRLSLFQVSIGISVVLLNGTLNRVMIVELGVPSWLVATMVALPLVF
APLRVLIGFKSDHHRSVLGWRRVPYIWMGTLLQFGGLAIMPFALLVLSASDSPGQVIAGRIGAALAFLLVGAGLHTTQTA
GLSLATDIAPEHSRPRVVAFLYVMLMFGMMASALTFGGVLADFSEMRLIQVIQGAALTEMVLNVIALWKQEARDPSRTSA
SRERPRFGDSWRQFREAGGSMRVLVAVGLGTAGFTMQDILLEPYGAEILHLTVGETTALTALFAAGTLAGFGLSARRLGK
GSDPYRIAALGGLVGLFAFSAVIFSAPLASPLVFRIGTTLIGFGGGLFAVGTLTAAMALVQNGESGLALGAWGAVQATAA
GVAIAGGGAIRDVMSQLAMDGRLGVALAGPATGYSIVYHVEIALLFVTLAVIGPLVRRRAAEPQQLQFGIAEFPG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pucC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR004896 [H]

Pfam domain/function: PF03209 PUCC [H]

EC number: NA

Molecular weight: Translated: 50083; Mature: 49951

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTRAPSFLQLWTRLSSRYLPFADAASTELPLSRLMRLSLFQVSIGISVVLLNGTLNRVM
CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEECEEEEEEECCCCEEE
IVELGVPSWLVATMVALPLVFAPLRVLIGFKSDHHRSVLGWRRVPYIWMGTLLQFGGLAI
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHH
MPFALLVLSASDSPGQVIAGRIGAALAFLLVGAGLHTTQTAGLSLATDIAPEHSRPRVVA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHH
FLYVMLMFGMMASALTFGGVLADFSEMRLIQVIQGAALTEMVLNVIALWKQEARDPSRTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCC
ASRERPRFGDSWRQFREAGGSMRVLVAVGLGTAGFTMQDILLEPYGAEILHLTVGETTAL
CCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHCCCCCEEEEEECCCHHHH
TALFAAGTLAGFGLSARRLGKGSDPYRIAALGGLVGLFAFSAVIFSAPLASPLVFRIGTT
HHHHHHHHHHHCCCCHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LIGFGGGLFAVGTLTAAMALVQNGESGLALGAWGAVQATAAGVAIAGGGAIRDVMSQLAM
HHHCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHCCEEEECCHHHHHHHHHHHC
DGRLGVALAGPATGYSIVYHVEIALLFVTLAVIGPLVRRRAAEPQQLQFGIAEFPG
CCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHCCCC
>Mature Secondary Structure 
STRAPSFLQLWTRLSSRYLPFADAASTELPLSRLMRLSLFQVSIGISVVLLNGTLNRVM
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEECEEEEEEECCCCEEE
IVELGVPSWLVATMVALPLVFAPLRVLIGFKSDHHRSVLGWRRVPYIWMGTLLQFGGLAI
EEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHHCCHHH
MPFALLVLSASDSPGQVIAGRIGAALAFLLVGAGLHTTQTAGLSLATDIAPEHSRPRVVA
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHH
FLYVMLMFGMMASALTFGGVLADFSEMRLIQVIQGAALTEMVLNVIALWKQEARDPSRTS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCC
ASRERPRFGDSWRQFREAGGSMRVLVAVGLGTAGFTMQDILLEPYGAEILHLTVGETTAL
CCCCCCCCCHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHCCCCCEEEEEECCCHHHH
TALFAAGTLAGFGLSARRLGKGSDPYRIAALGGLVGLFAFSAVIFSAPLASPLVFRIGTT
HHHHHHHHHHHCCCCHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
LIGFGGGLFAVGTLTAAMALVQNGESGLALGAWGAVQATAAGVAIAGGGAIRDVMSQLAM
HHHCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHCCEEEECCHHHHHHHHHHHC
DGRLGVALAGPATGYSIVYHVEIALLFVTLAVIGPLVRRRAAEPQQLQFGIAEFPG
CCCCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 6744416 [H]