| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is 146338444
Identifier: 146338444
GI number: 146338444
Start: 1445594
End: 1447822
Strand: Direct
Name: 146338444
Synonym: BRADO1360
Alternate gene names: NA
Gene position: 1445594-1447822 (Clockwise)
Preceding gene: 146338442
Following gene: 146338446
Centisome position: 19.39
GC content: 65.86
Gene sequence:
>2229_bases GTGACAGAACATGACGATGGCGGCCGATCCCTGGACATTTTCAGCATGCAGCCAGCCTTGCGGAAGCGCGACGATGTCGC CGACCTGTTCGCCCAGGCGAGCGCGTTTCACCGCTCCGGCGATCTGGCCAAGGCTCAGGCCGGCTACAGGAAGATCCTCA AGAAGCGGCCAAATCATTTCGGCGCGCTGTATCAGCTTGGACTGTCCGAACACCAGAGCCGCAAGTCCGACGAGGCGGAG CGCCTGCTGAAGCGGGCGCTGCTGGTCGAGCCGCGGTCCGTCGAGGCGCGGTATGCGCGGGCGGTCGTCCTGTCCGCGCT GCAGCGGGACAGCGAGGCACTGAGCTGCTTCGACGATCTCCTCGCCTTGAAGCCGGATCTTTTCGACGCGCATCTGGAGC GCGGCAAGCTGTTGTCGCGTCTCCGGCGTTTCGCCGACGCGGCCGTCAGCTACGACCACGCCATGCTGATCAATCCGCAG CGGCTGGACGTGTTGATCAACAAGGGCGAAGCGCTGCACTATCTCGGCCGCTTCGTCGATGCGATCGCGTGCTACGACCA GCTGCTCGCGGCCCATCCCACGCATCTGGCCGCGCTGATCAATCGGGGCTGCGCGTTCAAGGATCTGCGCCGCGCCGACG AGGCGATCGCCGATTTCGACCGGGCGCTGGCCCTGTCGCCGGACGACACGATTGCGCTGATCAATCGCGGCGAGACGTTC CTGACGCTGAAACGCAACGCCGACGCGCTCCACGATTTCGACCGCGTGATCGCGCTCGATCCGCAATTTGCGCTGGGCTG GCTCGGCCGCGCCAATGTCCTGATGTTGAACAAGCAGGTGAGCGAGGCGCTGGAGGCCTGCCAGCGTGCGCTCGCGATCG AGCCGAACTCGGCAAAGGCGCTGAACCAGATCGGTCAATGCCACGCGCTGCTGGGCGATGCGCAGGCCGCTGTCGCCTGT TTCGATGCCGCGCTCGCGATCGACCCGGCCGACGAGATCGCGCTGGAGAGCCGGATCTTCTCATTGGATTTCTGCGAGGT CGGCTTTGCTCAGCATCAGGCGGCCCGGTCGGAGTGGTGGCGCCGGATCGGCTCCAAGATCGCCGAGATGCATCCGCCTC ACCATGCCAATGATCCCGATCCCGATCGACGGATCGTCGTGGGCTACGTGTCGGGTGATTTCAAGGAGCATTCCGCCGCC CGCACCTTCCGCCCCGTGATCCAGAGCCATGACAAGTCGCAGGTCGAGGTGATCTGCTACTCGAATTCGCCGATTCAGGA CGCGATCACGGACACGTTCCGGCAGGCCGCCGATCGATGGCGCGACGTGACGCAATGGTCCGACGATCAGCTCGCAGATT GCATCGGGGTCGACAAGGTCGACATCCTCGTCGACCTGTCCGGGCACTCGCGCGGCAACCGGCTGAGCACCTTTGCGCGC AAGCCGGCCCCCATCCAGGTCACCGCGTGGGGCCATGCGACCGGCACCGGCCTGGCGACGATGGATTATCTGTTCGGCGA TCCGGTCATGGCGCCTCCGGAGATGCGTCACCTGTTTACGGAGCAGATCTACGATCTGCCAAGCTTGATCATCATCGAGC CGCCGCCTTCGGGACTGCGCAGCCTCGAGGCCCCGGTGACGTCCAACGGCCATGTCACCTACGGCGCGTTCACCAGGGCG AACCGGTTGTCCAGTGCCGTCCTCGACGTCTGGGCCCGCATCCTGCGCGCCGACGTCGCCGCCCGATTGCTGGTCAAGGA TTATCTGCTCAGCGATGCTGCGATCCAGGCCAGGCTGCTGGCCGACTTCGCCGCGCGCGGCATCGCGCCGGAGCGTATCG ACCTGATCGGGCCGACCTCCCGCGACGAGCATCTGGCTGCGCACCGGCTGATCGACATCTGGCTCGATCCTTTTCCCAAT GGCGGCGGCGTCTCGGTCTGGGAAGCCCTGCACATGGGCGTGCCGGTCGTATCGAAGCTCGGCAACGGAATGTGCAGCCG GGCCGGCGGCGCGATCCTGTCGGCGATCGGCATGGCCGACTGGGTCGCCACCGATGACGATGAGTATGTGGACATCGCCT TGCGCGCGACGCCGGACCGGCTCAACACGCTCCGTCGCCAGCTCCCCGACCTCATCGCGGAACGCTGCGCTCCGTCCGTC TACACCAGGGCTGTCGAAGCGGCCTATCGCACGATGTGGCAGACCTATTGCCGCGGTCGGCGGGCCTGA
Upstream 100 bases:
>100_bases GCACTGCCCCTCGCAACATGCTTAATGAATTGTTTACGCCTCTCACCGAAGCTCCGGCGGGCGACCGAATGACGCTCGCA TTCCGGCATTCTGCCCTGTC
Downstream 100 bases:
>100_bases GCGCCTGTGTTCTCGACAACTGGCCCCGCTCTGTGAGCACAGCCGAGCCGCATGGCGCGCGCTGCCGTAGGGCGGGTAAA GGAGCTGGTGCGGGGTGAAG
Product: O-linked N-acetylglucosamine transferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 742; Mature: 741
Protein sequence:
>742_residues MTEHDDGGRSLDIFSMQPALRKRDDVADLFAQASAFHRSGDLAKAQAGYRKILKKRPNHFGALYQLGLSEHQSRKSDEAE RLLKRALLVEPRSVEARYARAVVLSALQRDSEALSCFDDLLALKPDLFDAHLERGKLLSRLRRFADAAVSYDHAMLINPQ RLDVLINKGEALHYLGRFVDAIACYDQLLAAHPTHLAALINRGCAFKDLRRADEAIADFDRALALSPDDTIALINRGETF LTLKRNADALHDFDRVIALDPQFALGWLGRANVLMLNKQVSEALEACQRALAIEPNSAKALNQIGQCHALLGDAQAAVAC FDAALAIDPADEIALESRIFSLDFCEVGFAQHQAARSEWWRRIGSKIAEMHPPHHANDPDPDRRIVVGYVSGDFKEHSAA RTFRPVIQSHDKSQVEVICYSNSPIQDAITDTFRQAADRWRDVTQWSDDQLADCIGVDKVDILVDLSGHSRGNRLSTFAR KPAPIQVTAWGHATGTGLATMDYLFGDPVMAPPEMRHLFTEQIYDLPSLIIIEPPPSGLRSLEAPVTSNGHVTYGAFTRA NRLSSAVLDVWARILRADVAARLLVKDYLLSDAAIQARLLADFAARGIAPERIDLIGPTSRDEHLAAHRLIDIWLDPFPN GGGVSVWEALHMGVPVVSKLGNGMCSRAGGAILSAIGMADWVATDDDEYVDIALRATPDRLNTLRRQLPDLIAERCAPSV YTRAVEAAYRTMWQTYCRGRRA
Sequences:
>Translated_742_residues MTEHDDGGRSLDIFSMQPALRKRDDVADLFAQASAFHRSGDLAKAQAGYRKILKKRPNHFGALYQLGLSEHQSRKSDEAE RLLKRALLVEPRSVEARYARAVVLSALQRDSEALSCFDDLLALKPDLFDAHLERGKLLSRLRRFADAAVSYDHAMLINPQ RLDVLINKGEALHYLGRFVDAIACYDQLLAAHPTHLAALINRGCAFKDLRRADEAIADFDRALALSPDDTIALINRGETF LTLKRNADALHDFDRVIALDPQFALGWLGRANVLMLNKQVSEALEACQRALAIEPNSAKALNQIGQCHALLGDAQAAVAC FDAALAIDPADEIALESRIFSLDFCEVGFAQHQAARSEWWRRIGSKIAEMHPPHHANDPDPDRRIVVGYVSGDFKEHSAA RTFRPVIQSHDKSQVEVICYSNSPIQDAITDTFRQAADRWRDVTQWSDDQLADCIGVDKVDILVDLSGHSRGNRLSTFAR KPAPIQVTAWGHATGTGLATMDYLFGDPVMAPPEMRHLFTEQIYDLPSLIIIEPPPSGLRSLEAPVTSNGHVTYGAFTRA NRLSSAVLDVWARILRADVAARLLVKDYLLSDAAIQARLLADFAARGIAPERIDLIGPTSRDEHLAAHRLIDIWLDPFPN GGGVSVWEALHMGVPVVSKLGNGMCSRAGGAILSAIGMADWVATDDDEYVDIALRATPDRLNTLRRQLPDLIAERCAPSV YTRAVEAAYRTMWQTYCRGRRA >Mature_741_residues TEHDDGGRSLDIFSMQPALRKRDDVADLFAQASAFHRSGDLAKAQAGYRKILKKRPNHFGALYQLGLSEHQSRKSDEAER LLKRALLVEPRSVEARYARAVVLSALQRDSEALSCFDDLLALKPDLFDAHLERGKLLSRLRRFADAAVSYDHAMLINPQR LDVLINKGEALHYLGRFVDAIACYDQLLAAHPTHLAALINRGCAFKDLRRADEAIADFDRALALSPDDTIALINRGETFL TLKRNADALHDFDRVIALDPQFALGWLGRANVLMLNKQVSEALEACQRALAIEPNSAKALNQIGQCHALLGDAQAAVACF DAALAIDPADEIALESRIFSLDFCEVGFAQHQAARSEWWRRIGSKIAEMHPPHHANDPDPDRRIVVGYVSGDFKEHSAAR TFRPVIQSHDKSQVEVICYSNSPIQDAITDTFRQAADRWRDVTQWSDDQLADCIGVDKVDILVDLSGHSRGNRLSTFARK PAPIQVTAWGHATGTGLATMDYLFGDPVMAPPEMRHLFTEQIYDLPSLIIIEPPPSGLRSLEAPVTSNGHVTYGAFTRAN RLSSAVLDVWARILRADVAARLLVKDYLLSDAAIQARLLADFAARGIAPERIDLIGPTSRDEHLAAHRLIDIWLDPFPNG GGVSVWEALHMGVPVVSKLGNGMCSRAGGAILSAIGMADWVATDDDEYVDIALRATPDRLNTLRRQLPDLIAERCAPSVY TRAVEAAYRTMWQTYCRGRRA
Specific function: Unknown
COG id: COG3914
COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 9 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI32307150, Length=619, Percent_Identity=24.3941841680129, Blast_Score=144, Evalue=3e-34, Organism=Homo sapiens, GI32307148, Length=619, Percent_Identity=24.3941841680129, Blast_Score=144, Evalue=3e-34, Organism=Homo sapiens, GI301336134, Length=293, Percent_Identity=25.5972696245734, Blast_Score=84, Evalue=4e-16, Organism=Homo sapiens, GI310110582, Length=324, Percent_Identity=25, Blast_Score=83, Evalue=8e-16, Organism=Homo sapiens, GI310131789, Length=324, Percent_Identity=25, Blast_Score=83, Evalue=8e-16, Organism=Homo sapiens, GI83415184, Length=293, Percent_Identity=25.5972696245734, Blast_Score=83, Evalue=1e-15, Organism=Homo sapiens, GI310123097, Length=324, Percent_Identity=25, Blast_Score=83, Evalue=1e-15, Organism=Homo sapiens, GI167466177, Length=283, Percent_Identity=24.3816254416961, Blast_Score=79, Evalue=2e-14, Organism=Homo sapiens, GI167466175, Length=283, Percent_Identity=24.3816254416961, Blast_Score=78, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115532692, Length=526, Percent_Identity=23.7642585551331, Blast_Score=136, Evalue=4e-32, Organism=Caenorhabditis elegans, GI115532690, Length=521, Percent_Identity=23.8003838771593, Blast_Score=135, Evalue=7e-32, Organism=Caenorhabditis elegans, GI25147174, Length=218, Percent_Identity=24.7706422018349, Blast_Score=67, Evalue=5e-11, Organism=Drosophila melanogaster, GI17647755, Length=513, Percent_Identity=24.7563352826511, Blast_Score=137, Evalue=2e-32, Organism=Drosophila melanogaster, GI24585827, Length=513, Percent_Identity=24.7563352826511, Blast_Score=137, Evalue=2e-32, Organism=Drosophila melanogaster, GI24585829, Length=513, Percent_Identity=24.7563352826511, Blast_Score=137, Evalue=2e-32, Organism=Drosophila melanogaster, GI24647123, Length=250, Percent_Identity=24, Blast_Score=67, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008940 - InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 82052; Mature: 81921
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEHDDGGRSLDIFSMQPALRKRDDVADLFAQASAFHRSGDLAKAQAGYRKILKKRPNHF CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH GALYQLGLSEHQSRKSDEAERLLKRALLVEPRSVEARYARAVVLSALQRDSEALSCFDDL HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH LALKPDLFDAHLERGKLLSRLRRFADAAVSYDHAMLINPQRLDVLINKGEALHYLGRFVD HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHEEEEECCCHHHHHHHHHHH AIACYDQLLAAHPTHLAALINRGCAFKDLRRADEAIADFDRALALSPDDTIALINRGETF HHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCEE LTLKRNADALHDFDRVIALDPQFALGWLGRANVLMLNKQVSEALEACQRALAIEPNSAKA EEEECCCHHHHHHHHHEEECCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHH LNQIGQCHALLGDAQAAVACFDAALAIDPADEIALESRIFSLDFCEVGFAQHQAARSEWW HHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHH RRIGSKIAEMHPPHHANDPDPDRRIVVGYVSGDFKEHSAARTFRPVIQSHDKSQVEVICY HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEE SNSPIQDAITDTFRQAADRWRDVTQWSDDQLADCIGVDKVDILVDLSGHSRGNRLSTFAR CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHC KPAPIQVTAWGHATGTGLATMDYLFGDPVMAPPEMRHLFTEQIYDLPSLIIIEPPPSGLR CCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHH SLEAPVTSNGHVTYGAFTRANRLSSAVLDVWARILRADVAARLLVKDYLLSDAAIQARLL HCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADFAARGIAPERIDLIGPTSRDEHLAAHRLIDIWLDPFPNGGGVSVWEALHMGVPVVSKL HHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHH GNGMCSRAGGAILSAIGMADWVATDDDEYVDIALRATPDRLNTLRRQLPDLIAERCAPSV CCCHHHHHCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHH YTRAVEAAYRTMWQTYCRGRRA HHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TEHDDGGRSLDIFSMQPALRKRDDVADLFAQASAFHRSGDLAKAQAGYRKILKKRPNHF CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH GALYQLGLSEHQSRKSDEAERLLKRALLVEPRSVEARYARAVVLSALQRDSEALSCFDDL HHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH LALKPDLFDAHLERGKLLSRLRRFADAAVSYDHAMLINPQRLDVLINKGEALHYLGRFVD HHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHEEEEECCCHHHHHHHHHHH AIACYDQLLAAHPTHLAALINRGCAFKDLRRADEAIADFDRALALSPDDTIALINRGETF HHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCEE LTLKRNADALHDFDRVIALDPQFALGWLGRANVLMLNKQVSEALEACQRALAIEPNSAKA EEEECCCHHHHHHHHHEEECCCHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCHHH LNQIGQCHALLGDAQAAVACFDAALAIDPADEIALESRIFSLDFCEVGFAQHQAARSEWW HHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHH RRIGSKIAEMHPPHHANDPDPDRRIVVGYVSGDFKEHSAARTFRPVIQSHDKSQVEVICY HHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEEE SNSPIQDAITDTFRQAADRWRDVTQWSDDQLADCIGVDKVDILVDLSGHSRGNRLSTFAR CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHC KPAPIQVTAWGHATGTGLATMDYLFGDPVMAPPEMRHLFTEQIYDLPSLIIIEPPPSGLR CCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHH SLEAPVTSNGHVTYGAFTRANRLSSAVLDVWARILRADVAARLLVKDYLLSDAAIQARLL HCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADFAARGIAPERIDLIGPTSRDEHLAAHRLIDIWLDPFPNGGGVSVWEALHMGVPVVSKL HHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHH GNGMCSRAGGAILSAIGMADWVATDDDEYVDIALRATPDRLNTLRRQLPDLIAERCAPSV CCCHHHHHCHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCHHH YTRAVEAAYRTMWQTYCRGRRA HHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087; 9697413 [H]