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The map label for this gene is xpsD [H]

Identifier: 146338379

GI number: 146338379

Start: 1382277

End: 1384619

Strand: Direct

Name: xpsD [H]

Synonym: BRADO1291

Alternate gene names: 146338379

Gene position: 1382277-1384619 (Clockwise)

Preceding gene: 146338378

Following gene: 146338380

Centisome position: 18.54

GC content: 65.64

Gene sequence:

>2343_bases
GTGGGCGGACGAGTGAGTGATTTAGCTGAGATGGGCCCGGGTTGGCTGCGATTTCGCACACTCGCGACGCTGACCTGGCT
GGCGTTGGCGCTCGGGGGGTGCAACCCTGCGACGCTCGGCAACGACAATCGCGGTGACGACGTGCTCGACAAGGTTGGGC
GCCTCGATCTTTCTCCGCGCTATCCGAGGCAGGTCATGCCGGAGCAATCGCCGGCCGCGCGGCGCGCCAGGGCGGAAATC
TATGGCGGCACTGACGATCCCAGAGACGCGCGCGCGGAGGCACCGGCAGCCACGCTTCCGGTGCAGCAGGTGGCCGCCCA
TTCGCAGGCCGTCGGCAACGGCTTCGAGCTGAATTTCGAGAATACGCCGATTGCGACGGTCGCCAAGGTCGTGCTCGGCG
ACGTGCTCGGTGTGGGCTATACGATCGATCCGCGGATCCAGGGAACCGTGAGCCTGTCGTCGGTGCGTCCGGTGCCGAAG
TCGGACGTGGTCTACGTGCTCGAGAATGCGCTGCGCCTGGCCGGGACAGCCCTGGTGCGCGACAATTCCGGCTATCGTCT
GATCCCGTTGGGCGAGGCGGTCGGCGCGGGCAATGTGGACGCGCCCGGCGCGACGGCGGAGCCCGGCTACGGCATCACGA
TGCTTCCGCTGCAATACGTCTCCGCGCCGACGCTGTTGAAGCTGCTCGACAGCTTTGCGCTCAAGCCCGGCACCGTGCGG
GCGGATCCGGGGCGCAACGTCCTGCTGATCCAGGGAACAGGGGCCGAGCGGCGAACCGCCGCCGATGCGGCGCTGAGCTT
CGATGCGGACTGGATGCGCGGTCAATCTGTCGGGATCTTTCCGATCGAGAACGGCAATCCGGAACCGATCGTCGCCGAGC
TCGAGAAGATCATGGATACGGGCGACAGCGGCCTCGGCCAGAACATGGTCAAATTCCAAGCGGTCAACCGCATGAACGCT
GTCATGGTGATCAGCCGCAAGCCCGCACTGCTGCGTACCGCGGAGACCTGGATCAAGCGGCTGGATACCGGCAGCACGCT
GCGCAACAGCGTTCATGTCTACCGCGTCAAATACGGCGAGGCGCGGCAGATGGCGCGGGTGCTGAACGAGATGTTCACGG
GCAATTCCAGCGCGGTCGCCGACGCGTCGTCGACGGACCTCGCCCCGGGATCTGGATCTTCGTCGAGCTCGAGCAGCGAG
CGGCTGTCGGCCGCCGGAACGACAGCGTCCACCGGCTTCTCGGGCGCGTCTCAGGCCAACATCGGCGTGGTTGCCAATCG
CGGCTTCAATGGCACGCCGCCGCCGACACAGGTCGGCCTCGATGGCGGCTCTGAGGCGCGCGCGTCCTCCGCCGGCGGCA
AGCCGCTGATGGATGGCGTGCGCATCACGCCCGACGTGGTCAACAACACGCTGCTGATCTACGCCGACCGGGAGAACTAC
CGCATCATCGAAGCCACGCTGCGCCAGTGCGACCGGCCGCAGCTCCAGGTCGCGATCGATGCCACGATCGCCGAGGTCAC
CCTCAATGACAATCTGACCTATGGCGTGCAGGCCTATCTGACCAGCAAGAATCTCGGCTTGCGGCCCGATCAGGGCTCGC
TCCTCAACACCACATCGACCTCGGCACCGGCGACCGTGGCGTCGGCGGCGGGAACGATCACCAACGCGTTTCTGAGCCGC
GCCTTCCCGGGTTTCAATTTCCTGATCGGATCGGAATCGCAGCCGAGCGCGATCCTGAGCGCCCTGCATACGGTCACCGA
TGTGAAGGTGCTGTCCAATCCCTCGCTGGTGGTGATCGACAACCAGGCGGCGACGTTGCAGGTCGGCGATCAGGTGCCGG
TCTCGACCGGCAGCGCCACGGTGCTGACGACCAACAACACGGTCGTGAATACGATCGACTACCGCAACACCGGAATCATC
CTGCGGGTCGCGCCGCGGGTGAACGAGAACGGCAATGTCCGGCTGGAGATCGAGCAGGAAATCAGCAACGTTTCGCCGCA
GACTGCCAACAGCCTGACGCCGACGGTGGCGCAACGCAAGGTCAAGAGCTCGGTTGCGGTAGCCAGCGGTCAGACCGTGC
TGCTGGCCGGCCTCATCAGCGAAACTCATCAGGGCACGCGTACCGGCTTGCCGGGCGTCGACCAGATTCCGGGCTTTGGA
GATCTGTTCAGCAACAACGACCGCAGCCGAGGACGCACCGAGCTGATCATCTTCATCCGTCCGCAGATCATCCGTGACGG
CACCGATGCGCATTACGTCGCCGAGGAGCTGCGCTCGAAGCTGCGCGGAACGATCAAGCCGGTGTCAACCAGCGCGCTCC
AGGCGCAGCGGGCCAGCCGATGA

Upstream 100 bases:

>100_bases
GCAAGCAGCGGCCATTCCTCGCTAGGCAAGCAACGATCCGGGACGAACGTCAGGGCATCTCGTCCCGGAGTCGCAATGCA
GGACGTCATCGGTAGATCGG

Downstream 100 bases:

>100_bases
GGGGGCGCTCCACGTTCTTCGTTGCCGTCCTGGCGCTGTGTCTCGGCATGACGACGGCCGATGCCCGGCCACGTGGAGAC
GGATACACGGCGTTCGCGCG

Product: putative general secretion pathway protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 780; Mature: 779

Protein sequence:

>780_residues
MGGRVSDLAEMGPGWLRFRTLATLTWLALALGGCNPATLGNDNRGDDVLDKVGRLDLSPRYPRQVMPEQSPAARRARAEI
YGGTDDPRDARAEAPAATLPVQQVAAHSQAVGNGFELNFENTPIATVAKVVLGDVLGVGYTIDPRIQGTVSLSSVRPVPK
SDVVYVLENALRLAGTALVRDNSGYRLIPLGEAVGAGNVDAPGATAEPGYGITMLPLQYVSAPTLLKLLDSFALKPGTVR
ADPGRNVLLIQGTGAERRTAADAALSFDADWMRGQSVGIFPIENGNPEPIVAELEKIMDTGDSGLGQNMVKFQAVNRMNA
VMVISRKPALLRTAETWIKRLDTGSTLRNSVHVYRVKYGEARQMARVLNEMFTGNSSAVADASSTDLAPGSGSSSSSSSE
RLSAAGTTASTGFSGASQANIGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVRITPDVVNNTLLIYADRENY
RIIEATLRQCDRPQLQVAIDATIAEVTLNDNLTYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLSR
AFPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNTGII
LRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVASGQTVLLAGLISETHQGTRTGLPGVDQIPGFG
DLFSNNDRSRGRTELIIFIRPQIIRDGTDAHYVAEELRSKLRGTIKPVSTSALQAQRASR

Sequences:

>Translated_780_residues
MGGRVSDLAEMGPGWLRFRTLATLTWLALALGGCNPATLGNDNRGDDVLDKVGRLDLSPRYPRQVMPEQSPAARRARAEI
YGGTDDPRDARAEAPAATLPVQQVAAHSQAVGNGFELNFENTPIATVAKVVLGDVLGVGYTIDPRIQGTVSLSSVRPVPK
SDVVYVLENALRLAGTALVRDNSGYRLIPLGEAVGAGNVDAPGATAEPGYGITMLPLQYVSAPTLLKLLDSFALKPGTVR
ADPGRNVLLIQGTGAERRTAADAALSFDADWMRGQSVGIFPIENGNPEPIVAELEKIMDTGDSGLGQNMVKFQAVNRMNA
VMVISRKPALLRTAETWIKRLDTGSTLRNSVHVYRVKYGEARQMARVLNEMFTGNSSAVADASSTDLAPGSGSSSSSSSE
RLSAAGTTASTGFSGASQANIGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVRITPDVVNNTLLIYADRENY
RIIEATLRQCDRPQLQVAIDATIAEVTLNDNLTYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLSR
AFPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNTGII
LRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVASGQTVLLAGLISETHQGTRTGLPGVDQIPGFG
DLFSNNDRSRGRTELIIFIRPQIIRDGTDAHYVAEELRSKLRGTIKPVSTSALQAQRASR
>Mature_779_residues
GGRVSDLAEMGPGWLRFRTLATLTWLALALGGCNPATLGNDNRGDDVLDKVGRLDLSPRYPRQVMPEQSPAARRARAEIY
GGTDDPRDARAEAPAATLPVQQVAAHSQAVGNGFELNFENTPIATVAKVVLGDVLGVGYTIDPRIQGTVSLSSVRPVPKS
DVVYVLENALRLAGTALVRDNSGYRLIPLGEAVGAGNVDAPGATAEPGYGITMLPLQYVSAPTLLKLLDSFALKPGTVRA
DPGRNVLLIQGTGAERRTAADAALSFDADWMRGQSVGIFPIENGNPEPIVAELEKIMDTGDSGLGQNMVKFQAVNRMNAV
MVISRKPALLRTAETWIKRLDTGSTLRNSVHVYRVKYGEARQMARVLNEMFTGNSSAVADASSTDLAPGSGSSSSSSSER
LSAAGTTASTGFSGASQANIGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVRITPDVVNNTLLIYADRENYR
IIEATLRQCDRPQLQVAIDATIAEVTLNDNLTYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLSRA
FPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNTGIIL
RVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVASGQTVLLAGLISETHQGTRTGLPGVDQIPGFGD
LFSNNDRSRGRTELIIFIRPQIIRDGTDAHYVAEELRSKLRGTIKPVSTSALQAQRASR

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1450

COG function: function code NU; Type II secretory pathway, component PulD

Gene ontology:

Cell location: Cell outer membrane (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP D family [H]

Homologues:

Organism=Escherichia coli, GI87082242, Length=670, Percent_Identity=25.9701492537313, Blast_Score=152, Evalue=6e-38,
Organism=Escherichia coli, GI1789793, Length=312, Percent_Identity=23.7179487179487, Blast_Score=80, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR005644
- InterPro:   IPR004846
- InterPro:   IPR013356
- InterPro:   IPR004845 [H]

Pfam domain/function: PF00263 Secretin; PF03958 Secretin_N [H]

EC number: NA

Molecular weight: Translated: 82257; Mature: 82126

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGRVSDLAEMGPGWLRFRTLATLTWLALALGGCNPATLGNDNRGDDVLDKVGRLDLSPR
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
YPRQVMPEQSPAARRARAEIYGGTDDPRDARAEAPAATLPVQQVAAHSQAVGNGFELNFE
CCHHHCCCCCCHHHHHHHEEECCCCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
NTPIATVAKVVLGDVLGVGYTIDPRIQGTVSLSSVRPVPKSDVVYVLENALRLAGTALVR
CCCHHHHHHHHHHHHHHCCEEECCCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHCEEEEE
DNSGYRLIPLGEAVGAGNVDAPGATAEPGYGITMLPLQYVSAPTLLKLLDSFALKPGTVR
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHHHCCCCCCEE
ADPGRNVLLIQGTGAERRTAADAALSFDADWMRGQSVGIFPIENGNPEPIVAELEKIMDT
CCCCCEEEEEECCCCCHHHHHHHHEECCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC
GDSGLGQNMVKFQAVNRMNAVMVISRKPALLRTAETWIKRLDTGSTLRNSVHVYRVKYGE
CCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCH
ARQMARVLNEMFTGNSSAVADASSTDLAPGSGSSSSSSSERLSAAGTTASTGFSGASQAN
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
IGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVRITPDVVNNTLLIYADRENY
EEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECHHHHCCEEEEEECCCCC
RIIEATLRQCDRPQLQVAIDATIAEVTLNDNLTYGVQAYLTSKNLGLRPDQGSLLNTTST
EEHHHHHHHCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEECCCC
SAPATVASAAGTITNAFLSRAFPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVID
CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHEEEECCCCEEEEC
NQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNTGIILRVAPRVNENGNVRLEIEQE
CCCEEEEECCCCCCCCCCEEEEEECCEEEEEEEECCCEEEEEEECCCCCCCCEEEEEHHH
ISNVSPQTANSLTPTVAQRKVKSSVAVASGQTVLLAGLISETHQGTRTGLPGVDQIPGFG
HCCCCCCCCCCCCHHHHHHHHHHHHEECCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCC
DLFSNNDRSRGRTELIIFIRPQIIRDGTDAHYVAEELRSKLRGTIKPVSTSALQAQRASR
HHHCCCCCCCCCEEEEEEECCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
GGRVSDLAEMGPGWLRFRTLATLTWLALALGGCNPATLGNDNRGDDVLDKVGRLDLSPR
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC
YPRQVMPEQSPAARRARAEIYGGTDDPRDARAEAPAATLPVQQVAAHSQAVGNGFELNFE
CCHHHCCCCCCHHHHHHHEEECCCCCCCCHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
NTPIATVAKVVLGDVLGVGYTIDPRIQGTVSLSSVRPVPKSDVVYVLENALRLAGTALVR
CCCHHHHHHHHHHHHHHCCEEECCCCCEEEEHHHCCCCCCCCHHHHHHHHHHHHCEEEEE
DNSGYRLIPLGEAVGAGNVDAPGATAEPGYGITMLPLQYVSAPTLLKLLDSFALKPGTVR
CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEHHHHCCHHHHHHHHHHHCCCCCCEE
ADPGRNVLLIQGTGAERRTAADAALSFDADWMRGQSVGIFPIENGNPEPIVAELEKIMDT
CCCCCEEEEEECCCCCHHHHHHHHEECCCHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC
GDSGLGQNMVKFQAVNRMNAVMVISRKPALLRTAETWIKRLDTGSTLRNSVHVYRVKYGE
CCCCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHCCEEEEEEECCH
ARQMARVLNEMFTGNSSAVADASSTDLAPGSGSSSSSSSERLSAAGTTASTGFSGASQAN
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC
IGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVRITPDVVNNTLLIYADRENY
EEEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCEEECHHHHCCEEEEEECCCCC
RIIEATLRQCDRPQLQVAIDATIAEVTLNDNLTYGVQAYLTSKNLGLRPDQGSLLNTTST
EEHHHHHHHCCCCCEEEEEEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCEEECCCC
SAPATVASAAGTITNAFLSRAFPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVID
CCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHEEEECCCCEEEEC
NQAATLQVGDQVPVSTGSATVLTTNNTVVNTIDYRNTGIILRVAPRVNENGNVRLEIEQE
CCCEEEEECCCCCCCCCCEEEEEECCEEEEEEEECCCEEEEEEECCCCCCCCEEEEEHHH
ISNVSPQTANSLTPTVAQRKVKSSVAVASGQTVLLAGLISETHQGTRTGLPGVDQIPGFG
HCCCCCCCCCCCCHHHHHHHHHHHHEECCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCC
DLFSNNDRSRGRTELIIFIRPQIIRDGTDAHYVAEELRSKLRGTIKPVSTSALQAQRASR
HHHCCCCCCCCCEEEEEEECCEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1313415; 12024217; 10692359 [H]