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The map label for this gene is exbD [H]

Identifier: 146338267

GI number: 146338267

Start: 1241774

End: 1242253

Strand: Direct

Name: exbD [H]

Synonym: BRADO1171

Alternate gene names: 146338267

Gene position: 1241774-1242253 (Clockwise)

Preceding gene: 146338266

Following gene: 146338268

Centisome position: 16.65

GC content: 67.29

Gene sequence:

>480_bases
ATGGGCATGAGCATGGGCAGCGCGTCCGGCGGCGGTGGTCGCCGCGGTCGGCGCAGAGCGCAGGTGATGGCGGAGATCAA
CGTCACGCCGATGGTCGACGTCATGCTGGTGCTGCTGATCATCTTCATGGTCGCGGCGCCGCTCCTGACCGTGAACATCC
AGGTCGATTTGCCGCAGGCGCAGGGCGGCTCGGCCTCGACGGCCGATGCCAAGCCGCCGCTCGAGGTCACCGTGAAGAAG
ACCGGCGGCGGCTGCGCCTCGAAGGTCGACGTCTATCTCGGCGACTCGCCGATCGCGATCAACGAGCTTGGTCCGAAGAT
CAAGGCGATGAAGGATGCCGGTGCAGGCGGCCCCGACAACGTCGTCAAGATCCGCGGCGACCGCGACGCCTGCTACTCGG
ACATGATGAAGGTGCTGGGACTCGCGCGCGACGCCGGCTACCGCGCCAGCATCGTGGTGGTGCCGGAACAGGGCTCATGA

Upstream 100 bases:

>100_bases
GGAAGGCTTCGCGGATGAATTTTCGGCCATCCTGTCCCGTCAGATCGACGAGCGGGGATGAGGGCGGGTATAGTGGCCTC
CGGATCGTGAGCACCAGAAC

Downstream 100 bases:

>100_bases
CGTCAGACGACCTCATGCACTTCCTACGGACGCGCAAGGGCACGGCGCTGTCCGTGGCCGCGCACGTCATCGTGCTGTGC
GTGGGTCTGTTCAGCTTCTC

Product: putative TolR protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MGMSMGSASGGGGRRGRRRAQVMAEINVTPMVDVMLVLLIIFMVAAPLLTVNIQVDLPQAQGGSASTADAKPPLEVTVKK
TGGGCASKVDVYLGDSPIAINELGPKIKAMKDAGAGGPDNVVKIRGDRDACYSDMMKVLGLARDAGYRASIVVVPEQGS

Sequences:

>Translated_159_residues
MGMSMGSASGGGGRRGRRRAQVMAEINVTPMVDVMLVLLIIFMVAAPLLTVNIQVDLPQAQGGSASTADAKPPLEVTVKK
TGGGCASKVDVYLGDSPIAINELGPKIKAMKDAGAGGPDNVVKIRGDRDACYSDMMKVLGLARDAGYRASIVVVPEQGS
>Mature_158_residues
GMSMGSASGGGGRRGRRRAQVMAEINVTPMVDVMLVLLIIFMVAAPLLTVNIQVDLPQAQGGSASTADAKPPLEVTVKKT
GGGCASKVDVYLGDSPIAINELGPKIKAMKDAGAGGPDNVVKIRGDRDACYSDMMKVLGLARDAGYRASIVVVPEQGS

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=127, Percent_Identity=38.5826771653543, Blast_Score=82, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16387; Mature: 16256

Theoretical pI: Translated: 9.19; Mature: 9.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMSMGSASGGGGRRGRRRAQVMAEINVTPMVDVMLVLLIIFMVAAPLLTVNIQVDLPQA
CCCCCCCCCCCCCCCCHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCC
QGGSASTADAKPPLEVTVKKTGGGCASKVDVYLGDSPIAINELGPKIKAMKDAGAGGPDN
CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEHHCCCCCCEEHHCCCCCCCCC
VVKIRGDRDACYSDMMKVLGLARDAGYRASIVVVPEQGS
EEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC
>Mature Secondary Structure 
GMSMGSASGGGGRRGRRRAQVMAEINVTPMVDVMLVLLIIFMVAAPLLTVNIQVDLPQA
CCCCCCCCCCCCCCCHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEEECCCC
QGGSASTADAKPPLEVTVKKTGGGCASKVDVYLGDSPIAINELGPKIKAMKDAGAGGPDN
CCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCEEHHCCCCCCEEHHCCCCCCCCC
VVKIRGDRDACYSDMMKVLGLARDAGYRASIVVVPEQGS
EEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]