| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yfeW [C]
Identifier: 146338230
GI number: 146338230
Start: 1206061
End: 1207335
Strand: Direct
Name: yfeW [C]
Synonym: BRADO1130
Alternate gene names: 146338230
Gene position: 1206061-1207335 (Clockwise)
Preceding gene: 146338228
Following gene: 146338231
Centisome position: 16.17
GC content: 67.14
Gene sequence:
>1275_bases GTGCTCTTGAACAAGCTGATCTTCGCGGCCGCAGCCGCAGCCTTCACCGCGCTCGCCACACCGCTCGCCGCCGCGCCGCT GGCGGAGGCCAGGCCCGAGGAGGTCGGCTTCTCGACATCCGGCCTGGCTCGCATGGACGATTTCTTCGCCCGCGAGATCG CCGCGAAGCGCGTGCCTGGTGCGGTGGTGGCGATCGCGCGCGACGGCAAGCTGGTGCACTACAAGGCCTACGGCCAGCTC GATCCGGTCAAGGGCACGCCGATGCCGCTCGATGCGATCTTCGCGCTGGCCTCGATGACCAAGCCGATGGCCGCGGTGGC GGGGCTCACCTTGATGGAGCAGGGACGGCTGCCGCTGCAGGCGAAGCTCGCGGACTACTATCCGGCCTTCGCCGACATGA AGGTCGGCGTGGTCCAGGCCGATGGCGCGCTCAAGCTCGAGCCGCAGGCCCGGCCGATCCTGATCCACGATCTCTATCGC CACACCTCCGGTCTGATGTATGGCGGCCGGCCGGACAGCGCGAGCCCGGTGGCGCGGCTCTATCCCGACGGCATCGCACC GGCGATCGAGGGCGACACCCAGGCCTTCATCGAGCGCATCACCAAGCTGCCGCTGGCGCATCAGCCGGGCACGCAGTTTG AATATGGCTTCTCGATCGACGTGCTCGGCGCCGTCATCGAGAAGGTCAGCGAGCAGCGGCTCGGAGAATATCTCGCGGCC AATGTATGGAAGCCGCTCGGCATGAACGATGCGACCTTCGCGCCGTCAGACGCGCAACGGCCGCGGCTGGCGCGGCCGTT TCCGAACGATCCGCTCACCGGCAAGCCGCAGGCGATCAGGCTCCTGGATACAGTGACGAAGTCGGACTGCGGCGGTGCCT GCTCCTTCGCCACCATCGGCGACTACATCCGCTTCGGCCAGATGCTGCTCAATGGCGGCGAACTCGACGGCGCGCGCGTC CTGAGCCCGAAGACCGTGCATCACATGACCGCCAACCATCTCGGTCCGGAGATCAAGAACATGGTGGCCAATGTCGAGCC GCATCGCGCCGGCTTCGGCTTCGGGCTTGGTGTCGCGGTGCGCACCAGCGAGGGCCTGTCGGCGGTGCCCGGCAATCCCG GCGAGTTGAGCTGGAATGGCGCCTTCGGCACGCAGTTCTTCTGTGATCCGAAGGAGCGCCTGGTGGTGGTGGTCGGCACG GCCGCGCCGGGCGAGCTGCGCAAATATTATCGCGAGCAGGTGCAGGACATCGTCTATGGCGCGATGGTAAAGTGA
Upstream 100 bases:
>100_bases TGCGAGCGCTTGTCGTTCGCCGCCTGCTGCCCTACTGCTTGAGCAAGCGGACGTCACCGAATCCCATGACGACAAACGGG ATCGTGTTCGCCTCAGGGAG
Downstream 100 bases:
>100_bases CGCCATGCTCACCGTCCATCATCTCGGCAAATCCCAATCCGAACGCATCGTCTGGCTCTGCGAGGAGCTGGAGATTCCTT ATGATCTGAAATGCTACGCG
Product: putative penicillin binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 424; Mature: 424
Protein sequence:
>424_residues MLLNKLIFAAAAAAFTALATPLAAAPLAEARPEEVGFSTSGLARMDDFFAREIAAKRVPGAVVAIARDGKLVHYKAYGQL DPVKGTPMPLDAIFALASMTKPMAAVAGLTLMEQGRLPLQAKLADYYPAFADMKVGVVQADGALKLEPQARPILIHDLYR HTSGLMYGGRPDSASPVARLYPDGIAPAIEGDTQAFIERITKLPLAHQPGTQFEYGFSIDVLGAVIEKVSEQRLGEYLAA NVWKPLGMNDATFAPSDAQRPRLARPFPNDPLTGKPQAIRLLDTVTKSDCGGACSFATIGDYIRFGQMLLNGGELDGARV LSPKTVHHMTANHLGPEIKNMVANVEPHRAGFGFGLGVAVRTSEGLSAVPGNPGELSWNGAFGTQFFCDPKERLVVVVGT AAPGELRKYYREQVQDIVYGAMVK
Sequences:
>Translated_424_residues MLLNKLIFAAAAAAFTALATPLAAAPLAEARPEEVGFSTSGLARMDDFFAREIAAKRVPGAVVAIARDGKLVHYKAYGQL DPVKGTPMPLDAIFALASMTKPMAAVAGLTLMEQGRLPLQAKLADYYPAFADMKVGVVQADGALKLEPQARPILIHDLYR HTSGLMYGGRPDSASPVARLYPDGIAPAIEGDTQAFIERITKLPLAHQPGTQFEYGFSIDVLGAVIEKVSEQRLGEYLAA NVWKPLGMNDATFAPSDAQRPRLARPFPNDPLTGKPQAIRLLDTVTKSDCGGACSFATIGDYIRFGQMLLNGGELDGARV LSPKTVHHMTANHLGPEIKNMVANVEPHRAGFGFGLGVAVRTSEGLSAVPGNPGELSWNGAFGTQFFCDPKERLVVVVGT AAPGELRKYYREQVQDIVYGAMVK >Mature_424_residues MLLNKLIFAAAAAAFTALATPLAAAPLAEARPEEVGFSTSGLARMDDFFAREIAAKRVPGAVVAIARDGKLVHYKAYGQL DPVKGTPMPLDAIFALASMTKPMAAVAGLTLMEQGRLPLQAKLADYYPAFADMKVGVVQADGALKLEPQARPILIHDLYR HTSGLMYGGRPDSASPVARLYPDGIAPAIEGDTQAFIERITKLPLAHQPGTQFEYGFSIDVLGAVIEKVSEQRLGEYLAA NVWKPLGMNDATFAPSDAQRPRLARPFPNDPLTGKPQAIRLLDTVTKSDCGGACSFATIGDYIRFGQMLLNGGELDGARV LSPKTVHHMTANHLGPEIKNMVANVEPHRAGFGFGLGVAVRTSEGLSAVPGNPGELSWNGAFGTQFFCDPKERLVVVVGT AAPGELRKYYREQVQDIVYGAMVK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87082101, Length=432, Percent_Identity=25.462962962963, Blast_Score=97, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 45316; Mature: 45316
Theoretical pI: Translated: 7.65; Mature: 7.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLLNKLIFAAAAAAFTALATPLAAAPLAEARPEEVGFSTSGLARMDDFFAREIAAKRVPG CHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCC AVVAIARDGKLVHYKAYGQLDPVKGTPMPLDAIFALASMTKPMAAVAGLTLMEQGRLPLQ EEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH AKLADYYPAFADMKVGVVQADGALKLEPQARPILIHDLYRHTSGLMYGGRPDSASPVARL HHHHHHCCCHHCCEEEEEECCCCEEECCCCCCCHHHHHHHHHCCCEECCCCCCCCCHHHH YPDGIAPAIEGDTQAFIERITKLPLAHQPGTQFEYGFSIDVLGAVIEKVSEQRLGEYLAA CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHH NVWKPLGMNDATFAPSDAQRPRLARPFPNDPLTGKPQAIRLLDTVTKSDCGGACSFATIG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH DYIRFGQMLLNGGELDGARVLSPKTVHHMTANHLGPEIKNMVANVEPHRAGFGFGLGVAV HHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEE RTSEGLSAVPGNPGELSWNGAFGTQFFCDPKERLVVVVGTAAPGELRKYYREQVQDIVYG EECCCCCCCCCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH AMVK HCCC >Mature Secondary Structure MLLNKLIFAAAAAAFTALATPLAAAPLAEARPEEVGFSTSGLARMDDFFAREIAAKRVPG CHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHCCCC AVVAIARDGKLVHYKAYGQLDPVKGTPMPLDAIFALASMTKPMAAVAGLTLMEQGRLPLQ EEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH AKLADYYPAFADMKVGVVQADGALKLEPQARPILIHDLYRHTSGLMYGGRPDSASPVARL HHHHHHCCCHHCCEEEEEECCCCEEECCCCCCCHHHHHHHHHCCCEECCCCCCCCCHHHH YPDGIAPAIEGDTQAFIERITKLPLAHQPGTQFEYGFSIDVLGAVIEKVSEQRLGEYLAA CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHH NVWKPLGMNDATFAPSDAQRPRLARPFPNDPLTGKPQAIRLLDTVTKSDCGGACSFATIG HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHH DYIRFGQMLLNGGELDGARVLSPKTVHHMTANHLGPEIKNMVANVEPHRAGFGFGLGVAV HHHHHHHHHHCCCCCCCCEECCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCEEEE RTSEGLSAVPGNPGELSWNGAFGTQFFCDPKERLVVVVGTAAPGELRKYYREQVQDIVYG EECCCCCCCCCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH AMVK HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]