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The map label for this gene is phyR [H]

Identifier: 146338152

GI number: 146338152

Start: 1115450

End: 1116214

Strand: Direct

Name: phyR [H]

Synonym: BRADO1049

Alternate gene names: 146338152

Gene position: 1115450-1116214 (Clockwise)

Preceding gene: 146338149

Following gene: 146338154

Centisome position: 14.96

GC content: 65.62

Gene sequence:

>765_bases
TTGCGCCGGTATGCGCGTGCGCTCACCGGCAGCCAGGGTTCCGGAGATGCCTATGTCGGCGCGATGCTGGAAGCGCTGAT
CCAGGATCCGGCGCTGTTGGACGAGCGCTACGGCCCGCGCGCCGGGCTGTTCCGGCTGTTTACCCAGATCTGGAACTCGG
TCGCGCTGAACGACGACGCGGAGGTGGCCACGCTGCCGATGCCGCCCGAGCGCCGCCTGTCGAATATCACGCCGCTCCCG
CGCCAGGCGTTCTTGCTGCTGTCCCTCGAAGGTTTTCCGGAGGAGGAAGTTTCCTTCATCCTCGACATCGACGTTGCAGA
GACGCGCCGGCTCGCGGATGCGGCCGGCCGCGAACTCGCCGCCGAAATCGCGACGGATGTGCTGATCATCGAGGACGAGA
CGTTCATCGCAATGGACCTCGAGAGCCTCGTGAAGAATCTCGGACACAACGTGATCGGCGTTGCGCGTACCCACGCCGAC
GCGGTTGCGCTCGCCAAGAACAAGAAGCCCGGCCTGATCCTGGCAGACATTCAGCTTGCTGACGGCTCCTCGGGTCTCGA
CGCGGTAAACGAGCTGCTGCGGACGTTCGAGGTGCCCGTCGTGTTCATCACGGCCTATCCGGAGCGTTTCCTCACCGGCG
AGCGGCCGGAGCCGGCGTTCCTGATCTCCAAGCCGTTCCAGCCGGCGATGGTTTCCGCCGTGGCGAGTCAGGCGCTGTTC
TTCCAGCGCAACTCGCGCAACCGGATGCCCAAGCCGGCTGCCTGA

Upstream 100 bases:

>100_bases
AGGCGTAATCAGCTCATCATGGAACCCGGGCGGGAAGCCCAGAATACCGAATGGAGTGGGGATGAGCCGATCACAGCTAG
TTGCTGAACATTTGCCGCTG

Downstream 100 bases:

>100_bases
GCGGAATCGGATTTTTGGTTGTGAGATTTGTCTTCGGCGCGCTCCTCGGAGTGCGCCGTTTTGTTTTCCCGGCCTCCTGC
GAGGAGAGCGGGTTCAACAG

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MRRYARALTGSQGSGDAYVGAMLEALIQDPALLDERYGPRAGLFRLFTQIWNSVALNDDAEVATLPMPPERRLSNITPLP
RQAFLLLSLEGFPEEEVSFILDIDVAETRRLADAAGRELAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHAD
AVALAKNKKPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKPFQPAMVSAVASQALF
FQRNSRNRMPKPAA

Sequences:

>Translated_254_residues
MRRYARALTGSQGSGDAYVGAMLEALIQDPALLDERYGPRAGLFRLFTQIWNSVALNDDAEVATLPMPPERRLSNITPLP
RQAFLLLSLEGFPEEEVSFILDIDVAETRRLADAAGRELAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHAD
AVALAKNKKPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKPFQPAMVSAVASQALF
FQRNSRNRMPKPAA
>Mature_254_residues
MRRYARALTGSQGSGDAYVGAMLEALIQDPALLDERYGPRAGLFRLFTQIWNSVALNDDAEVATLPMPPERRLSNITPLP
RQAFLLLSLEGFPEEEVSFILDIDVAETRRLADAAGRELAAEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHAD
AVALAKNKKPGLILADIQLADGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKPFQPAMVSAVASQALF
FQRNSRNRMPKPAA

Specific function: Key regulator for adaptation to epiphytic life (leaf colonizing) of the bacterium. Positively regulates several genes including katE, sodA, hsp20, dps and gloA. However it is not known whether this regulation is direct or indirect. Also induces several de

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR014605
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27773; Mature: 27773

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRYARALTGSQGSGDAYVGAMLEALIQDPALLDERYGPRAGLFRLFTQIWNSVALNDDA
CCHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
EVATLPMPPERRLSNITPLPRQAFLLLSLEGFPEEEVSFILDIDVAETRRLADAAGRELA
CEEECCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
AEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHADAVALAKNKKPGLILADIQLA
HHHHCCEEEEECCCEEEHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEEEC
DGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKPFQPAMVSAVASQALF
CCCCCHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
FQRNSRNRMPKPAA
HCCCCCCCCCCCCC
>Mature Secondary Structure
MRRYARALTGSQGSGDAYVGAMLEALIQDPALLDERYGPRAGLFRLFTQIWNSVALNDDA
CCHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
EVATLPMPPERRLSNITPLPRQAFLLLSLEGFPEEEVSFILDIDVAETRRLADAAGRELA
CEEECCCCHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHH
AEIATDVLIIEDETFIAMDLESLVKNLGHNVIGVARTHADAVALAKNKKPGLILADIQLA
HHHHCCEEEEECCCEEEHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCEEEEEEEEC
DGSSGLDAVNELLRTFEVPVVFITAYPERFLTGERPEPAFLISKPFQPAMVSAVASQALF
CCCCCHHHHHHHHHHHCCCEEEEEECCHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHH
FQRNSRNRMPKPAA
HCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA