| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is yejA [C]
Identifier: 146338106
GI number: 146338106
Start: 1067402
End: 1069246
Strand: Direct
Name: yejA [C]
Synonym: BRADO1002
Alternate gene names: 146338106
Gene position: 1067402-1069246 (Clockwise)
Preceding gene: 146338105
Following gene: 146338107
Centisome position: 14.31
GC content: 64.39
Gene sequence:
>1845_bases ATGACCCCGGCGCTCGGCGCCGCCGCCAGCTTCGTTTCCGCCGACGCGGCGCAGGCGCAGGCCGGCGAGCAGTTGGTCTG GCGCCACGGCCTGTCGCTGTTCGGCGAGGTGAAGTACCCGGCCGACTTCAAGCGATTCGACTACGTCAATCCCGACGCGC CGAAGGGCGGCACGGCCCGGATGATCTCGCTCGGGACCTTCGACAACTTCAACATCGTCGTGATGTATGTGAAGGGCAAC ATCGCGGTCGCGGCGGCGCAGATCTACGAGACCCTGATGACGCGGTCGCAGGACGAGATCTCGACCGAGTACGGCCTGCT GGCCGAAGCCGCCTCCTACCCGGACGACTATTCCTGGGTGATCTACCGCCTGCGCAAGGACGCGCGCTGGCATGACGGCA AACCGGTGACGCCCGAGGACGTCATCTTCTCGCTCGACGTGCTCAAGAAGAACAGCCCGTTCTACTCGTCCTACTACCGC CATGTCGTCAAGACCGAGAAGACCGGCGACCTCGAGGTGAAGTTCACCTTCGACGGCCCGGGCAACCGCGAGCTGCCGCA CATCGTCGGCGAACTGCTCGTGCTGCCCAAGCATTATTGGGAAGGCACCGACGCGCAGGGCCGCAAGCGCGACGTCACCG CGACCACCCTGGAGCCGCCGCTCGGGTCGAGCCCCTACCGCATCAAGGACTTCGTGCCCGGCCGCTCGATCAAGCTGGAG CGCGTGAAGGATTACTGGGGTGCCAACCTGCCGGTCCGCATCGGCCAGTACAATTTCGACGAGCTGCAGTTCGAGTATTT CCGCGACAACCTCGTTGCGCTCGAAGCCTTCAAGGCCGACCAGGCGGACTGGATCAGCGAGAATTCGGCCAAGCAATGGG CCACGGCCTATGACTTCCCGGCGATCACTGAGAAGCGCGCGGTCAAGGAGGAGTTTCCGGTCCGCGACTCCGGCCGCATG CAGGGCTTCGTCTTCAACCTGCGCCGTCCGCAATTCCAGGACGCCCGGCTGCGCCGCGCCTTCAACTATGCGTTCGATTT CGAGGAGATGAACAAGCAGCTGTTCTTCGGCCAATACAAGCGCATCAACAGCTATTTCGAGGGCACGGATTTGGCCTGCT CCGGCCTGCCGCAGGGTCAGGAGCTGCAGATCCTCGAGGGCCTGCGCGGCCAGGTGCCGCCGGAGGTGTTCACCACCGTC TACCAGAACCCGGTCGGCGGCAACCCCGAGAACGTCCGCGCCAATCTGCGCGAGGCGACCAGGCTCCTGAAGGACGCGGG CTACGAGATCAAGGACCGCAAGCTGGTCGATCCCGCCGGCAAGCAGGTCGCGATCGAACTCCTGGTGCAGGATCCATCAT CGGAGCGCATCGTGCTGTTCTACAAGCCGTCGCTGGAGCGGCTCGGCGTCACCGTCACGGTGCGCCAGGTCGACAATGTC CAGTATGAGCAGCGCGCCCGCACCTTCGACTACGACATGATCATCGATACCTGGGGCCAGTCGCTGTCGCCCGGCAACGA GCAGCGCGATTTCTGGGGCTCGAAGGCGGCCGATGAGCCGGGCTCGAAGAATGCGGTGGGCATCAAGAACCCCGCCATCG ACGAACTGATCGAGAAGATCATCTTCGCCAAGGACCGCGCATCCCTGGAGGCCGCGACGCATGCGCTCGACCGCGTGCTG CTGTGGAATTTCTACGTCGTGCCGCAGTTCACCTATCCGTTCGCGCGCAGCGCGCGCTGGGACCGCTTCAGCCATTTCGA GCCGTTCCCGAAATTCGCCAGCAGCGGCTGGCCGTCACTGTGGTGGTTCGACGCCGACAAGGCTGCCAAGGTGAAGCGGT CTTGA
Upstream 100 bases:
>100_bases GGCCCAGGCCGGCCGAAGGCTCCCGAGCGATCTTATTCAGAGGAAGTCTCATTTGACGATTACCCGACGACAGCTGCTGC AGAGCAGCGCCTTCGCTGCC
Downstream 100 bases:
>100_bases GCACGATCTCGCATCTGTCCCGCCGCCGCGTGCTCGGGCTGGGCCTGGGCGCGCTCGGCGTCTCCTTGCTGAAGCCGGCG AACGCCGCGGAATTCGGCCC
Product: oligopeptide ABC transporter periplasmic substrate-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 614; Mature: 613
Protein sequence:
>614_residues MTPALGAAASFVSADAAQAQAGEQLVWRHGLSLFGEVKYPADFKRFDYVNPDAPKGGTARMISLGTFDNFNIVVMYVKGN IAVAAAQIYETLMTRSQDEISTEYGLLAEAASYPDDYSWVIYRLRKDARWHDGKPVTPEDVIFSLDVLKKNSPFYSSYYR HVVKTEKTGDLEVKFTFDGPGNRELPHIVGELLVLPKHYWEGTDAQGRKRDVTATTLEPPLGSSPYRIKDFVPGRSIKLE RVKDYWGANLPVRIGQYNFDELQFEYFRDNLVALEAFKADQADWISENSAKQWATAYDFPAITEKRAVKEEFPVRDSGRM QGFVFNLRRPQFQDARLRRAFNYAFDFEEMNKQLFFGQYKRINSYFEGTDLACSGLPQGQELQILEGLRGQVPPEVFTTV YQNPVGGNPENVRANLREATRLLKDAGYEIKDRKLVDPAGKQVAIELLVQDPSSERIVLFYKPSLERLGVTVTVRQVDNV QYEQRARTFDYDMIIDTWGQSLSPGNEQRDFWGSKAADEPGSKNAVGIKNPAIDELIEKIIFAKDRASLEAATHALDRVL LWNFYVVPQFTYPFARSARWDRFSHFEPFPKFASSGWPSLWWFDADKAAKVKRS
Sequences:
>Translated_614_residues MTPALGAAASFVSADAAQAQAGEQLVWRHGLSLFGEVKYPADFKRFDYVNPDAPKGGTARMISLGTFDNFNIVVMYVKGN IAVAAAQIYETLMTRSQDEISTEYGLLAEAASYPDDYSWVIYRLRKDARWHDGKPVTPEDVIFSLDVLKKNSPFYSSYYR HVVKTEKTGDLEVKFTFDGPGNRELPHIVGELLVLPKHYWEGTDAQGRKRDVTATTLEPPLGSSPYRIKDFVPGRSIKLE RVKDYWGANLPVRIGQYNFDELQFEYFRDNLVALEAFKADQADWISENSAKQWATAYDFPAITEKRAVKEEFPVRDSGRM QGFVFNLRRPQFQDARLRRAFNYAFDFEEMNKQLFFGQYKRINSYFEGTDLACSGLPQGQELQILEGLRGQVPPEVFTTV YQNPVGGNPENVRANLREATRLLKDAGYEIKDRKLVDPAGKQVAIELLVQDPSSERIVLFYKPSLERLGVTVTVRQVDNV QYEQRARTFDYDMIIDTWGQSLSPGNEQRDFWGSKAADEPGSKNAVGIKNPAIDELIEKIIFAKDRASLEAATHALDRVL LWNFYVVPQFTYPFARSARWDRFSHFEPFPKFASSGWPSLWWFDADKAAKVKRS >Mature_613_residues TPALGAAASFVSADAAQAQAGEQLVWRHGLSLFGEVKYPADFKRFDYVNPDAPKGGTARMISLGTFDNFNIVVMYVKGNI AVAAAQIYETLMTRSQDEISTEYGLLAEAASYPDDYSWVIYRLRKDARWHDGKPVTPEDVIFSLDVLKKNSPFYSSYYRH VVKTEKTGDLEVKFTFDGPGNRELPHIVGELLVLPKHYWEGTDAQGRKRDVTATTLEPPLGSSPYRIKDFVPGRSIKLER VKDYWGANLPVRIGQYNFDELQFEYFRDNLVALEAFKADQADWISENSAKQWATAYDFPAITEKRAVKEEFPVRDSGRMQ GFVFNLRRPQFQDARLRRAFNYAFDFEEMNKQLFFGQYKRINSYFEGTDLACSGLPQGQELQILEGLRGQVPPEVFTTVY QNPVGGNPENVRANLREATRLLKDAGYEIKDRKLVDPAGKQVAIELLVQDPSSERIVLFYKPSLERLGVTVTVRQVDNVQ YEQRARTFDYDMIIDTWGQSLSPGNEQRDFWGSKAADEPGSKNAVGIKNPAIDELIEKIIFAKDRASLEAATHALDRVLL WNFYVVPQFTYPFARSARWDRFSHFEPFPKFASSGWPSLWWFDADKAAKVKRS
Specific function: Possible binding-protein with either a transport or enzymatic activity [H]
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=599, Percent_Identity=38.3973288814691, Blast_Score=391, Evalue=1e-110,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 70027; Mature: 69895
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPALGAAASFVSADAAQAQAGEQLVWRHGLSLFGEVKYPADFKRFDYVNPDAPKGGTAR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCCCCHHHCCCCCCCCCCCCCEE MISLGTFDNFNIVVMYVKGNIAVAAAQIYETLMTRSQDEISTEYGLLAEAASYPDDYSWV EEEEECCCCCCEEEEEEECCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEE IYRLRKDARWHDGKPVTPEDVIFSLDVLKKNSPFYSSYYRHVVKTEKTGDLEVKFTFDGP EEEEHHCCCCCCCCCCCHHHHEEEEEHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC GNRELPHIVGELLVLPKHYWEGTDAQGRKRDVTATTLEPPLGSSPYRIKDFVPGRSIKLE CCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCEEHH RVKDYWGANLPVRIGQYNFDELQFEYFRDNLVALEAFKADQADWISENSAKQWATAYDFP HHHHHHCCCCCEEECCCCHHHHHHHHHHCCEEEEEECCCCCCHHHCCCCHHHHHHHCCCC AITEKRAVKEEFPVRDSGRMQGFVFNLRRPQFQDARLRRAFNYAFDFEEMNKQLFFGQYK CHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHH RINSYFEGTDLACSGLPQGQELQILEGLRGQVPPEVFTTVYQNPVGGNPENVRANLREAT HHHHHCCCCCCEECCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH RLLKDAGYEIKDRKLVDPAGKQVAIELLVQDPSSERIVLFYKPSLERLGVTVTVRQVDNV HHHHHCCCCCCCCEECCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCCC QYEQRARTFDYDMIIDTWGQSLSPGNEQRDFWGSKAADEPGSKNAVGIKNPAIDELIEKI CHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH IFAKDRASLEAATHALDRVLLWNFYVVPQFTYPFARSARWDRFSHFEPFPKFASSGWPSL HHHCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHCCCCCCCCCCCCCHHHHCCCCCEE WWFDADKAAKVKRS EEECCCCCHHCCCC >Mature Secondary Structure TPALGAAASFVSADAAQAQAGEQLVWRHGLSLFGEVKYPADFKRFDYVNPDAPKGGTAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCCCCHHHCCCCCCCCCCCCCEE MISLGTFDNFNIVVMYVKGNIAVAAAQIYETLMTRSQDEISTEYGLLAEAASYPDDYSWV EEEEECCCCCCEEEEEEECCEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCEE IYRLRKDARWHDGKPVTPEDVIFSLDVLKKNSPFYSSYYRHVVKTEKTGDLEVKFTFDGP EEEEHHCCCCCCCCCCCHHHHEEEEEHHCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC GNRELPHIVGELLVLPKHYWEGTDAQGRKRDVTATTLEPPLGSSPYRIKDFVPGRSIKLE CCCCHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCEEHH RVKDYWGANLPVRIGQYNFDELQFEYFRDNLVALEAFKADQADWISENSAKQWATAYDFP HHHHHHCCCCCEEECCCCHHHHHHHHHHCCEEEEEECCCCCCHHHCCCCHHHHHHHCCCC AITEKRAVKEEFPVRDSGRMQGFVFNLRRPQFQDARLRRAFNYAFDFEEMNKQLFFGQYK CHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHEECHHHHHHHHHHHHHH RINSYFEGTDLACSGLPQGQELQILEGLRGQVPPEVFTTVYQNPVGGNPENVRANLREAT HHHHHCCCCCCEECCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHH RLLKDAGYEIKDRKLVDPAGKQVAIELLVQDPSSERIVLFYKPSLERLGVTVTVRQVDNV HHHHHCCCCCCCCEECCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEECCCC QYEQRARTFDYDMIIDTWGQSLSPGNEQRDFWGSKAADEPGSKNAVGIKNPAIDELIEKI CHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH IFAKDRASLEAATHALDRVLLWNFYVVPQFTYPFARSARWDRFSHFEPFPKFASSGWPSL HHHCCHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHCCCCCCCCCCCCCHHHHCCCCCEE WWFDADKAAKVKRS EEECCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]