Definition Bradyrhizobium sp. ORS278 chromosome, complete genome.
Accession NC_009445
Length 7,456,587

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The map label for this gene is ttuD [H]

Identifier: 146338077

GI number: 146338077

Start: 1031151

End: 1032431

Strand: Reverse

Name: ttuD [H]

Synonym: BRADO0973

Alternate gene names: 146338077

Gene position: 1032431-1031151 (Counterclockwise)

Preceding gene: 146338078

Following gene: 146338075

Centisome position: 13.85

GC content: 71.74

Gene sequence:

>1281_bases
ATGATCGACCGCCGTCCACTGTTGCGTGCCATCTTCGACGCCGCCGTCGCCGCGGCCCATCCCGACGTGGTGCTGCCTGC
GTTCCTGCCGGCGTCGCCCAAGGGACGGATCATCTGCCTCGCCGCTGGCAAGGGCGCGGCGGCGATGGCGGTGGCGGCGG
AGCGACATTACTTGGACACGCTGGGGGTCGATCCGGCGAAGCTCGTCGGCATTGCGACCACCCGCCATGGCCATGGCGTG
CCGACCCGCCGCGTCAAGGTGATCGAGGCCGGCCACCCGATGCCGGACGAGGCCGGACTGAAGGCCGCCGACGACACCCT
GCAATTGGCGGCGACCGCCCAAGCCGACGATCTGATGCTGGTGTTGATCTCCGGCGGCGGCTCCGCCAACTGGGTCGCGC
CGGCGCATGGCGTCAGCTTCGCGCAGAAGCAGCAGCTGACGCGGGCGCTGCTGCGCTCGGGCGCGCCGATCGGCGAGATG
AACATCGTCCGCAAGCATCTGTCGCGGATCAAGGGCGGTCGGCTGGCGCGGGCGGGTCAGAAGGCCGAGATCGTCACGCT
GGCGATCTCCGACGTACCGCATGACGATCCCTCCGCCATCGCCTCCGGGCCGACGGTGCCGGATCCGACGACGCTGGCGG
ATGCCCGCGCGATCGTCGCCAAATACAGGCTTGAGGTCGACCCGGCGATCGCGCGGGCGCTCGACGATGCCGCCAATGAG
AGCTGCAAGCCCGGCGACCCCGCCTTCGCCCGCGCCTCGTTCGAGCTGATCGCGCGCCCGGCGAGCTCGCTCGCGGCTGC
CGTGGCCGCCGTGAAGGCCGCCGGCTACGACGTGCTCGACCTCGGCGCCGATCTCGAAGGCGAGGCCCGAGAGGTCGCCG
CCGATCACGCCAAGCTGGCACGCGAGGCCCGTTCGCTCGGCCGCCGCATGGCGATCATTTCCGGCGGCGAGCTCACGGTG
ACCGTCCGCGGCCAGGGCCGCGGCGGGCCGAACCAGGAATATGCGCTCGCGCTCGCCGACCTGCTCCAGGACATGGACGG
CGTCGCGGCGCTGGCCGGCGACACCGACGGCGCCGATGGCGGCGGCGGCAGCGCCTCCGATCCGGCCGGCGCGCTGGTCG
ATGCCGAGGTCATCGCGGCGATGCGGGTCCAGAAGCTCGATCCGCCGGCCTATCTCGCCAACAACGACGCCACCGCCTTC
TTCGCGGCCACCGGCGGTCTGCTGCAGACCGGCCCGACGCTGACCAACGTCAACGACGTCAGGGTGATCCTGGTCGAGTG
A

Upstream 100 bases:

>100_bases
CCGGCGCGAACATGGCCCCGCAGGCTCGACCTGCGGGGTTTGCCTTCTTCATCTTGGCCGGGCTAAGGAGACGAGACGCC
TCCAGCCTTGCAGGAATTCG

Downstream 100 bases:

>100_bases
GGGCGCCACCCCTTCAGAACTCCTCCGCGATCTTGGTCAGCATCGCCAGCAGCGTCTCGCGCCCATCCGGGCCGAGCAGC
TCGTTCAGCCGCGCCTCGTG

Product: putative hydroxypyruvate reductase glycerate kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MIDRRPLLRAIFDAAVAAAHPDVVLPAFLPASPKGRIICLAAGKGAAAMAVAAERHYLDTLGVDPAKLVGIATTRHGHGV
PTRRVKVIEAGHPMPDEAGLKAADDTLQLAATAQADDLMLVLISGGGSANWVAPAHGVSFAQKQQLTRALLRSGAPIGEM
NIVRKHLSRIKGGRLARAGQKAEIVTLAISDVPHDDPSAIASGPTVPDPTTLADARAIVAKYRLEVDPAIARALDDAANE
SCKPGDPAFARASFELIARPASSLAAAVAAVKAAGYDVLDLGADLEGEAREVAADHAKLAREARSLGRRMAIISGGELTV
TVRGQGRGGPNQEYALALADLLQDMDGVAALAGDTDGADGGGGSASDPAGALVDAEVIAAMRVQKLDPPAYLANNDATAF
FAATGGLLQTGPTLTNVNDVRVILVE

Sequences:

>Translated_426_residues
MIDRRPLLRAIFDAAVAAAHPDVVLPAFLPASPKGRIICLAAGKGAAAMAVAAERHYLDTLGVDPAKLVGIATTRHGHGV
PTRRVKVIEAGHPMPDEAGLKAADDTLQLAATAQADDLMLVLISGGGSANWVAPAHGVSFAQKQQLTRALLRSGAPIGEM
NIVRKHLSRIKGGRLARAGQKAEIVTLAISDVPHDDPSAIASGPTVPDPTTLADARAIVAKYRLEVDPAIARALDDAANE
SCKPGDPAFARASFELIARPASSLAAAVAAVKAAGYDVLDLGADLEGEAREVAADHAKLAREARSLGRRMAIISGGELTV
TVRGQGRGGPNQEYALALADLLQDMDGVAALAGDTDGADGGGGSASDPAGALVDAEVIAAMRVQKLDPPAYLANNDATAF
FAATGGLLQTGPTLTNVNDVRVILVE
>Mature_426_residues
MIDRRPLLRAIFDAAVAAAHPDVVLPAFLPASPKGRIICLAAGKGAAAMAVAAERHYLDTLGVDPAKLVGIATTRHGHGV
PTRRVKVIEAGHPMPDEAGLKAADDTLQLAATAQADDLMLVLISGGGSANWVAPAHGVSFAQKQQLTRALLRSGAPIGEM
NIVRKHLSRIKGGRLARAGQKAEIVTLAISDVPHDDPSAIASGPTVPDPTTLADARAIVAKYRLEVDPAIARALDDAANE
SCKPGDPAFARASFELIARPASSLAAAVAAVKAAGYDVLDLGADLEGEAREVAADHAKLAREARSLGRRMAIISGGELTV
TVRGQGRGGPNQEYALALADLLQDMDGVAALAGDTDGADGGGGSASDPAGALVDAEVIAAMRVQKLDPPAYLANNDATAF
FAATGGLLQTGPTLTNVNDVRVILVE

Specific function: Degrades an unidentified toxic product from the first step of tartrate degradation [H]

COG id: COG2379

COG function: function code G; Putative glycerate kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI31543063, Length=488, Percent_Identity=32.9918032786885, Blast_Score=169, Evalue=5e-42,
Organism=Caenorhabditis elegans, GI193205461, Length=466, Percent_Identity=26.3948497854077, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI19920578, Length=496, Percent_Identity=28.8306451612903, Blast_Score=129, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007835 [H]

Pfam domain/function: PF05161 MOFRL [H]

EC number: =1.1.1.81 [H]

Molecular weight: Translated: 43592; Mature: 43592

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDRRPLLRAIFDAAVAAAHPDVVLPAFLPASPKGRIICLAAGKGAAAMAVAAERHYLDT
CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCEEHHHHHHHHHHHH
LGVDPAKLVGIATTRHGHGVPTRRVKVIEAGHPMPDEAGLKAADDTLQLAATAQADDLML
CCCCHHHEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
VLISGGGSANWVAPAHGVSFAQKQQLTRALLRSGAPIGEMNIVRKHLSRIKGGRLARAGQ
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEECCCC
KAEIVTLAISDVPHDDPSAIASGPTVPDPTTLADARAIVAKYRLEVDPAIARALDDAANE
CCEEEEEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
SCKPGDPAFARASFELIARPASSLAAAVAAVKAAGYDVLDLGADLEGEAREVAADHAKLA
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH
REARSLGRRMAIISGGELTVTVRGQGRGGPNQEYALALADLLQDMDGVAALAGDTDGADG
HHHHHHCCEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCC
GGGSASDPAGALVDAEVIAAMRVQKLDPPAYLANNDATAFFAATGGLLQTGPTLTNVNDV
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCEECCCCCCCCCCE
RVILVE
EEEEEC
>Mature Secondary Structure
MIDRRPLLRAIFDAAVAAAHPDVVLPAFLPASPKGRIICLAAGKGAAAMAVAAERHYLDT
CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEECCCCCEEHHHHHHHHHHHH
LGVDPAKLVGIATTRHGHGVPTRRVKVIEAGHPMPDEAGLKAADDTLQLAATAQADDLML
CCCCHHHEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
VLISGGGSANWVAPAHGVSFAQKQQLTRALLRSGAPIGEMNIVRKHLSRIKGGRLARAGQ
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEECCCC
KAEIVTLAISDVPHDDPSAIASGPTVPDPTTLADARAIVAKYRLEVDPAIARALDDAANE
CCEEEEEEEECCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
SCKPGDPAFARASFELIARPASSLAAAVAAVKAAGYDVLDLGADLEGEAREVAADHAKLA
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHH
REARSLGRRMAIISGGELTVTVRGQGRGGPNQEYALALADLLQDMDGVAALAGDTDGADG
HHHHHHCCEEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCC
GGGSASDPAGALVDAEVIAAMRVQKLDPPAYLANNDATAFFAATGGLLQTGPTLTNVNDV
CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCEECCCCCCCCCCE
RVILVE
EEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7592429 [H]