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The map label for this gene is rbfA [H]

Identifier: 146337228

GI number: 146337228

Start: 62918

End: 63334

Strand: Direct

Name: rbfA [H]

Synonym: BRADO0054

Alternate gene names: 146337228

Gene position: 62918-63334 (Clockwise)

Preceding gene: 146337227

Following gene: 146337229

Centisome position: 0.84

GC content: 61.87

Gene sequence:

>417_bases
ATGCCTCGTCATCATCAGAGGGGAAGCGCGGCTTCCGGCGGCTCGCAGCGTCAGCTGCGCGTCGCCGAGACCGTGCGTCA
CGCTGTCGCCGACATTCTCAGCCAGGGTAGCGCGCACGATCCGGACCTGGAGGGACACATCATCACGGTGCCCGAAGTCC
GCATGTCGCCCGATCTCAAGCTTGCAACGATCTACATCATGCCGCTCGGCGGACGTGACACCGACGTCGTGCTCGCGGCG
CTGGAGCGCAACAAGAAGTTCCTGCGCGGCGAGGTCGCGCGGCGCGTTAACCTGAAATTTGCACCTGACATCCGCTTCCG
CGTCGACGAGCGATTCGACGAAGCGGAACGGATCGAGAAATTACTCAGAACACCCGCGGTGCAGAGAGATCTCAATTCGG
ATTTGGAAGAGAGCTGA

Upstream 100 bases:

>100_bases
GCTGCGCAGCTTGAACTTAACCAAGCGTCGTTGAACTCAATCAGAATGATCCGCTCGCCCGCGCGCATGCCGGGCGATGA
TCCCATGGATTTTTTGCAAA

Downstream 100 bases:

>100_bases
TGACCATTCCCCCGGAAACCGGCGCTGTCGATGCGCTCAGCATCGTGCCCAAGGCCGTCAACGTTCAAAAAAATTCTTCC
GACGCGCGTCCTCCGCGCGA

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MPRHHQRGSAASGGSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLKLATIYIMPLGGRDTDVVLAA
LERNKKFLRGEVARRVNLKFAPDIRFRVDERFDEAERIEKLLRTPAVQRDLNSDLEES

Sequences:

>Translated_138_residues
MPRHHQRGSAASGGSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLKLATIYIMPLGGRDTDVVLAA
LERNKKFLRGEVARRVNLKFAPDIRFRVDERFDEAERIEKLLRTPAVQRDLNSDLEES
>Mature_137_residues
PRHHQRGSAASGGSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLKLATIYIMPLGGRDTDVVLAAL
ERNKKFLRGEVARRVNLKFAPDIRFRVDERFDEAERIEKLLRTPAVQRDLNSDLEES

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 15544; Mature: 15413

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRHHQRGSAASGGSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCE
LATIYIMPLGGRDTDVVLAALERNKKFLRGEVARRVNLKFAPDIRFRVDERFDEAERIEK
EEEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHCCCEECCCCEEECCCCCCHHHHHHH
LLRTPAVQRDLNSDLEES
HHHCCHHHHHHCCCCCCC
>Mature Secondary Structure 
PRHHQRGSAASGGSQRQLRVAETVRHAVADILSQGSAHDPDLEGHIITVPEVRMSPDLK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCE
LATIYIMPLGGRDTDVVLAALERNKKFLRGEVARRVNLKFAPDIRFRVDERFDEAERIEK
EEEEEEEECCCCCHHHHHHHHHHCHHHHHHHHHHHCCCEECCCCEEECCCCCCHHHHHHH
LLRTPAVQRDLNSDLEES
HHHCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA