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The map label for this gene is yqeV [H]

Identifier: 146302766

GI number: 146302766

Start: 6079189

End: 6080523

Strand: Reverse

Name: yqeV [H]

Synonym: Fjoh_5039

Alternate gene names: 146302766

Gene position: 6080523-6079189 (Counterclockwise)

Preceding gene: 146302768

Following gene: 146302757

Centisome position: 99.73

GC content: 34.53

Gene sequence:

>1335_bases
ATGGAAAATAGAAAAAAAGTTGCCTTTTACACTCTGGGTTGTAAACTGAATTTTTCAGAGACTTCAACAATCGCCAGAAA
TTTTAATGACGAAGGTTTTGATCGCGTCGATTTTGAGGAAGTTGCCGATATTTATGTTATTAATACCTGCTCTGTTACAG
AAAATGCTGATAAACAATTTAAGCAGGTTGTAAAAAAGGCAATGAAATTAAATGAAAAGGCCTTCGTAGCAGCAGTTGGC
TGTTATGCTCAGCTGAAACCAGAAGAATTAGCTGCTGTAGACGGTGTCGATTTGGTTTTGGGAGCTACAGAAAAATTTAA
AATCACAGATTATATTCACGATTTGAGCAAAAACGATATGGGTGAAGTTCATTCATGCGAAATTGCCGAAGCTGATTTTT
ATGTAGGGAGCTATTCTATTGGTGATCGTACACGCGCTTTCCTGAAAGTTCAGGACGGATGCGATTATAAATGTACGTAT
TGTACAATTCCGCTGGCTCGTGGAATTTCAAGAAGTGATGCTTTAGAAAATGTTCTAAAAAATGCTAAAGAAATCTCTGC
TCAAAATATTAGAGAAATTGTTTTAACCGGAGTAAATATTGGAGATTACGGAAAAGGGGAGTTTGGAAACAAAAAACACG
AACATACTTTTCTTGATTTAGTTCAGGCTTTGGATAAAGTTGATGGAATTGAGCGTCTTCGTATTTCCTCTATCGAACCT
AATTTATTGAAAAATGAAACAATAGATTTTGTTTCAAAAAGCCGAACTTTTGTACCGCATTTTCATATTCCGTTACAATC
AGGAAGCAATGATATTTTAAAATTAATGAAACGCCGTTATCTGCGTGAAGTATATATTGACCGAGTAAATAAAATTCGCG
AAGTTATGCCCCATGCTTGTATTGGTGTAGATGTAATTGTTGGTTTTCCTGGCGAAACAGATGAACATTTCTTAGAAACG
TATCATTTTTTAAATGAGTTGGATATTTCTTATTTACACGTTTTTACCTATTCTGAAAGAGATAATACAGAAGCTGTAGA
TATGCCTGGAGTTGTTCCTTCAAATGTAAGGGCAAAACGCAGTAAAATGCTGCGAGGTTTATCCGTTAAAAAACGCCGTG
CTTTTTATGAAAGTCAGTTAGGAACAAACAGAACCGTACTTTTTGAAAGTGAAAATAAAGAAGGATATATTCACGGTTTT
ACTGAAAACTATGTTAAAGTAAAAACACCTTGGAATCCAGAATTGATTAATACGTTACACGAAATCAATTTAACAAAGAT
TGATGAAGATGGAAGTGTTCGTATGGAGTTTCTAAATAAATTAGCAGAAGCTTAA

Upstream 100 bases:

>100_bases
GTTGAAACGAAGTGCCTTAATTGGTTTTCTTTTACCAATTTTGTTTGTAAATTTGCAGCCTTAAATTTTTTGACAACGAT
TTCATTAATTTAAGAAAATT

Downstream 100 bases:

>100_bases
AAATAAACTCAAAGTATTTGTCATTGCGAGGAACGAAGCAACCGCACTAATAATGAGTAAGCTTGAGGTTTAAAGCAATA
CATAATGAGATTGCTTCGTT

Product: MiaB-like tRNA modifying protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 444

Protein sequence:

>444_residues
MENRKKVAFYTLGCKLNFSETSTIARNFNDEGFDRVDFEEVADIYVINTCSVTENADKQFKQVVKKAMKLNEKAFVAAVG
CYAQLKPEELAAVDGVDLVLGATEKFKITDYIHDLSKNDMGEVHSCEIAEADFYVGSYSIGDRTRAFLKVQDGCDYKCTY
CTIPLARGISRSDALENVLKNAKEISAQNIREIVLTGVNIGDYGKGEFGNKKHEHTFLDLVQALDKVDGIERLRISSIEP
NLLKNETIDFVSKSRTFVPHFHIPLQSGSNDILKLMKRRYLREVYIDRVNKIREVMPHACIGVDVIVGFPGETDEHFLET
YHFLNELDISYLHVFTYSERDNTEAVDMPGVVPSNVRAKRSKMLRGLSVKKRRAFYESQLGTNRTVLFESENKEGYIHGF
TENYVKVKTPWNPELINTLHEINLTKIDEDGSVRMEFLNKLAEA

Sequences:

>Translated_444_residues
MENRKKVAFYTLGCKLNFSETSTIARNFNDEGFDRVDFEEVADIYVINTCSVTENADKQFKQVVKKAMKLNEKAFVAAVG
CYAQLKPEELAAVDGVDLVLGATEKFKITDYIHDLSKNDMGEVHSCEIAEADFYVGSYSIGDRTRAFLKVQDGCDYKCTY
CTIPLARGISRSDALENVLKNAKEISAQNIREIVLTGVNIGDYGKGEFGNKKHEHTFLDLVQALDKVDGIERLRISSIEP
NLLKNETIDFVSKSRTFVPHFHIPLQSGSNDILKLMKRRYLREVYIDRVNKIREVMPHACIGVDVIVGFPGETDEHFLET
YHFLNELDISYLHVFTYSERDNTEAVDMPGVVPSNVRAKRSKMLRGLSVKKRRAFYESQLGTNRTVLFESENKEGYIHGF
TENYVKVKTPWNPELINTLHEINLTKIDEDGSVRMEFLNKLAEA
>Mature_444_residues
MENRKKVAFYTLGCKLNFSETSTIARNFNDEGFDRVDFEEVADIYVINTCSVTENADKQFKQVVKKAMKLNEKAFVAAVG
CYAQLKPEELAAVDGVDLVLGATEKFKITDYIHDLSKNDMGEVHSCEIAEADFYVGSYSIGDRTRAFLKVQDGCDYKCTY
CTIPLARGISRSDALENVLKNAKEISAQNIREIVLTGVNIGDYGKGEFGNKKHEHTFLDLVQALDKVDGIERLRISSIEP
NLLKNETIDFVSKSRTFVPHFHIPLQSGSNDILKLMKRRYLREVYIDRVNKIREVMPHACIGVDVIVGFPGETDEHFLET
YHFLNELDISYLHVFTYSERDNTEAVDMPGVVPSNVRAKRSKMLRGLSVKKRRAFYESQLGTNRTVLFESENKEGYIHGF
TENYVKVKTPWNPELINTLHEINLTKIDEDGSVRMEFLNKLAEA

Specific function: Unknown

COG id: COG0621

COG function: function code J; 2-methylthioadenine synthetase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

Organism=Homo sapiens, GI28872784, Length=422, Percent_Identity=26.0663507109005, Blast_Score=158, Evalue=1e-38,
Organism=Homo sapiens, GI28872782, Length=422, Percent_Identity=26.0663507109005, Blast_Score=158, Evalue=1e-38,
Organism=Homo sapiens, GI93277076, Length=433, Percent_Identity=25.8660508083141, Blast_Score=132, Evalue=9e-31,
Organism=Escherichia coli, GI1786882, Length=432, Percent_Identity=28.0092592592593, Blast_Score=179, Evalue=4e-46,
Organism=Escherichia coli, GI1787057, Length=400, Percent_Identity=25.75, Blast_Score=147, Evalue=1e-36,
Organism=Caenorhabditis elegans, GI17553146, Length=442, Percent_Identity=26.0180995475113, Blast_Score=156, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI71996771, Length=222, Percent_Identity=26.5765765765766, Blast_Score=77, Evalue=3e-14,
Organism=Drosophila melanogaster, GI21356207, Length=438, Percent_Identity=25.1141552511416, Blast_Score=158, Evalue=7e-39,
Organism=Drosophila melanogaster, GI19922432, Length=433, Percent_Identity=27.2517321016166, Blast_Score=130, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR020612
- InterPro:   IPR013848
- InterPro:   IPR006467
- InterPro:   IPR007197
- InterPro:   IPR002792 [H]

Pfam domain/function: PF04055 Radical_SAM; PF01938 TRAM; PF00919 UPF0004 [H]

EC number: NA

Molecular weight: Translated: 50523; Mature: 50523

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENRKKVAFYTLGCKLNFSETSTIARNFNDEGFDRVDFEEVADIYVINTCSVTENADKQF
CCCCCEEEEEEEEEEEECCHHHHHHHCCCCCCCCCCCHHHHCCEEEEEECCCCCCHHHHH
KQVVKKAMKLNEKAFVAAVGCYAQLKPEELAAVDGVDLVLGATEKFKITDYIHDLSKNDM
HHHHHHHHHCCCHHHEEEECHHHHCCHHHHHHCCCCEEEECCCCCEEHHHHHHHCCCCCC
GEVHSCEIAEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDALENVLK
CCCCCCEEECCEEEEEEECCCCCCEEEEEEECCCCEEEEEEECHHHCCCCHHHHHHHHHH
NAKEISAQNIREIVLTGVNIGDYGKGEFGNKKHEHTFLDLVQALDKVDGIERLRISSIEP
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHEECCCCC
NLLKNETIDFVSKSRTFVPHFHIPLQSGSNDILKLMKRRYLREVYIDRVNKIREVMPHAC
CHHHCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVDMPGVVPSNVRAKR
CCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHH
SKMLRGLSVKKRRAFYESQLGTNRTVLFESENKEGYIHGFTENYVKVKTPWNPELINTLH
HHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCEEEEECCCCHHHHHHHH
EINLTKIDEDGSVRMEFLNKLAEA
HCCCEEECCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MENRKKVAFYTLGCKLNFSETSTIARNFNDEGFDRVDFEEVADIYVINTCSVTENADKQF
CCCCCEEEEEEEEEEEECCHHHHHHHCCCCCCCCCCCHHHHCCEEEEEECCCCCCHHHHH
KQVVKKAMKLNEKAFVAAVGCYAQLKPEELAAVDGVDLVLGATEKFKITDYIHDLSKNDM
HHHHHHHHHCCCHHHEEEECHHHHCCHHHHHHCCCCEEEECCCCCEEHHHHHHHCCCCCC
GEVHSCEIAEADFYVGSYSIGDRTRAFLKVQDGCDYKCTYCTIPLARGISRSDALENVLK
CCCCCCEEECCEEEEEEECCCCCCEEEEEEECCCCEEEEEEECHHHCCCCHHHHHHHHHH
NAKEISAQNIREIVLTGVNIGDYGKGEFGNKKHEHTFLDLVQALDKVDGIERLRISSIEP
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHEECCCCC
NLLKNETIDFVSKSRTFVPHFHIPLQSGSNDILKLMKRRYLREVYIDRVNKIREVMPHAC
CHHHCCHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
IGVDVIVGFPGETDEHFLETYHFLNELDISYLHVFTYSERDNTEAVDMPGVVPSNVRAKR
CCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHH
SKMLRGLSVKKRRAFYESQLGTNRTVLFESENKEGYIHGFTENYVKVKTPWNPELINTLH
HHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCEEEEECCCCHHHHHHHH
EINLTKIDEDGSVRMEFLNKLAEA
HCCCEEECCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9023197; 9384377 [H]