| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is yfmR [H]
Identifier: 146302723
GI number: 146302723
Start: 6033202
End: 6035064
Strand: Direct
Name: yfmR [H]
Synonym: Fjoh_4996
Alternate gene names: 146302723
Gene position: 6033202-6035064 (Clockwise)
Preceding gene: 146302722
Following gene: 146302724
Centisome position: 98.96
GC content: 33.44
Gene sequence:
>1863_bases GTGAATTACTTATCTGTAGAAAATATATCGAAGTCATTTGGCGAAAGAGTCCTTTTTGACAACATTTCTTTTGGAATCAA TAAAGATCAAAAAATTGCTTTTATTGCCAAAAATGGGTCTGGTAAAACTACCATTATGAGCATTATTAATGGCTTAGACG AACCAGATACCGGACAGGTTGTTTTAAGAAAAGGAATTAGAATGGCATTTCTTTCTCAGGATAACAACCTTCAGGATGAA CTTACAATCGAAGAAAGTATTTTCGCTTCAGATAATGAAACGCTTAAAATAATTGAAGCTTACGAAAAAGCATTAGAAAA TCCAGATGATGAAGAAGCCTACCAAAAAGCTTTTGACGGAATGGATCAGCATAATGCATGGGATTTTGAAACGCAGTACA AACAGATTCTTTTTAAATTAAAACTGGAAGATTTTAAACTGAAAGTAAAAAATCTTTCGGGAGGGCAAAAAAAACGTCTT TCACTGGCTATCATATTGATCAATCGTCCAGATTTATTGATTCTGGATGAGCCTACCAACCATTTAGATCTTGAAATGAT CGAATGGCTTGAAAGCTATTTTGCCAAAGAAAATATTACCTTATTTATGGTAACGCACGACCGTTTCTTTTTAGAGCGTG TGTGTAATGAAATTATCGAATTAGACAACGGAAAATTATACCAATACAAAGGAAATTACTCTTACTATTTAGAGAAAAAA GAAGAGCGAATTGCTTCTGAAAATTCGAGTATTGACAAAGCTAAAAACTTATTTGTAAAAGAATTAGAATGGATGCGACG CCAGCCAAAAGCGAGAACAACCAAATCTAAATCACGTCAGGACGATTTTTACATTATTAAAGAAAAAGCACAAAGCCGAC GTAAAGAAAATAAAGTCGAACTTGAAATTAATATGGAAAGAATGGGAAGCAAAATTATTGAGCTTCATAAACTTTCTAAA AAATTCAAAGACCGTGTTATTCTGGATAATTTTAGTTTTGATTTTCAGCGTGGTGAAAGAATCGGGATTATTGGTAAAAA CGGAACCGGAAAATCGACTTTCTTAAATCTGCTTACGGGTACAATTCCGCCAGACAGCGGACGTGTTGTAAAAGGAGATA CAATTAAAATTGGTTATTACACACAATCCGGAATTAATCCAAAACCGGGACAGCGTGTTATTGATATTATTAAGGAATAC GGAGAATATATTCCGCTTGCAAAAGGAAAAATTATTTCGGCTTCACAATTGTTAGAGCGTTTTCTTTTTGACGCTAAAAA GCAATACGATTATGTCGAAAAATTAAGCGGAGGCGAATTAAAACGTTTGTATTTATGTACGGTTTTAATTCAAAATCCAA ATTTTTTAATTCTCGATGAGCCTACAAACGATTTAGATATTGTAACGCTTAACGTTCTGGAAAGTTTCCTTTTAGATTAT CCGGGCTGTTTATTGGTTGTTTCGCACGACCGTTACTTTATGGATAAAATCGTCGATCATTTATTTGTTTTTAGAGGACA AGGCGAAATCGAAAATTTCCCAGGAAACTATTCTGATTTCCGTGCTTACGAAGACAGTGCCGATGTTGCCCAAAAAGAAG AAAACAAAGCTGAAAAGAAAGACTGGAAACAAAATAACCCAACCGGAAATTTAAGCTTTAACGAACAAAAAGAATATCAA AAAATTGAAAGAGAAATCAAAGATTTAGAAATTGAAAAAGCTAAAATCGAACAGTTATTCTCTGATGGAAAAGTAGCCGA TGCTGATATTGAGAAAAAAGCAAACGAGCTTCAAAATATCATAAATAAAATTGATTTAAAAGAAGAACGATGGTTCGAAC TTTCTGCAAAGATTGAAGGATAA
Upstream 100 bases:
>100_bases CATAAATAATTCGCAAATCGTAAGATAAAAGTTTACTTTTGCAGAAAGTTATGTTTTTCAAAACACTCATAACTCATAAT TTATAACTTACAATTACAAA
Downstream 100 bases:
>100_bases TTTAGTTTTCAGTCGCAGTTAACACACAGACTGAAAACTGCAACTGCGACTGAAAACTAATTTTATTAAATTAGCTCTTT AAAAAGATAAAATATGAAAC
Product: ABC transporter-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 620; Mature: 620
Protein sequence:
>620_residues MNYLSVENISKSFGERVLFDNISFGINKDQKIAFIAKNGSGKTTIMSIINGLDEPDTGQVVLRKGIRMAFLSQDNNLQDE LTIEESIFASDNETLKIIEAYEKALENPDDEEAYQKAFDGMDQHNAWDFETQYKQILFKLKLEDFKLKVKNLSGGQKKRL SLAIILINRPDLLILDEPTNHLDLEMIEWLESYFAKENITLFMVTHDRFFLERVCNEIIELDNGKLYQYKGNYSYYLEKK EERIASENSSIDKAKNLFVKELEWMRRQPKARTTKSKSRQDDFYIIKEKAQSRRKENKVELEINMERMGSKIIELHKLSK KFKDRVILDNFSFDFQRGERIGIIGKNGTGKSTFLNLLTGTIPPDSGRVVKGDTIKIGYYTQSGINPKPGQRVIDIIKEY GEYIPLAKGKIISASQLLERFLFDAKKQYDYVEKLSGGELKRLYLCTVLIQNPNFLILDEPTNDLDIVTLNVLESFLLDY PGCLLVVSHDRYFMDKIVDHLFVFRGQGEIENFPGNYSDFRAYEDSADVAQKEENKAEKKDWKQNNPTGNLSFNEQKEYQ KIEREIKDLEIEKAKIEQLFSDGKVADADIEKKANELQNIINKIDLKEERWFELSAKIEG
Sequences:
>Translated_620_residues MNYLSVENISKSFGERVLFDNISFGINKDQKIAFIAKNGSGKTTIMSIINGLDEPDTGQVVLRKGIRMAFLSQDNNLQDE LTIEESIFASDNETLKIIEAYEKALENPDDEEAYQKAFDGMDQHNAWDFETQYKQILFKLKLEDFKLKVKNLSGGQKKRL SLAIILINRPDLLILDEPTNHLDLEMIEWLESYFAKENITLFMVTHDRFFLERVCNEIIELDNGKLYQYKGNYSYYLEKK EERIASENSSIDKAKNLFVKELEWMRRQPKARTTKSKSRQDDFYIIKEKAQSRRKENKVELEINMERMGSKIIELHKLSK KFKDRVILDNFSFDFQRGERIGIIGKNGTGKSTFLNLLTGTIPPDSGRVVKGDTIKIGYYTQSGINPKPGQRVIDIIKEY GEYIPLAKGKIISASQLLERFLFDAKKQYDYVEKLSGGELKRLYLCTVLIQNPNFLILDEPTNDLDIVTLNVLESFLLDY PGCLLVVSHDRYFMDKIVDHLFVFRGQGEIENFPGNYSDFRAYEDSADVAQKEENKAEKKDWKQNNPTGNLSFNEQKEYQ KIEREIKDLEIEKAKIEQLFSDGKVADADIEKKANELQNIINKIDLKEERWFELSAKIEG >Mature_620_residues MNYLSVENISKSFGERVLFDNISFGINKDQKIAFIAKNGSGKTTIMSIINGLDEPDTGQVVLRKGIRMAFLSQDNNLQDE LTIEESIFASDNETLKIIEAYEKALENPDDEEAYQKAFDGMDQHNAWDFETQYKQILFKLKLEDFKLKVKNLSGGQKKRL SLAIILINRPDLLILDEPTNHLDLEMIEWLESYFAKENITLFMVTHDRFFLERVCNEIIELDNGKLYQYKGNYSYYLEKK EERIASENSSIDKAKNLFVKELEWMRRQPKARTTKSKSRQDDFYIIKEKAQSRRKENKVELEINMERMGSKIIELHKLSK KFKDRVILDNFSFDFQRGERIGIIGKNGTGKSTFLNLLTGTIPPDSGRVVKGDTIKIGYYTQSGINPKPGQRVIDIIKEY GEYIPLAKGKIISASQLLERFLFDAKKQYDYVEKLSGGELKRLYLCTVLIQNPNFLILDEPTNDLDIVTLNVLESFLLDY PGCLLVVSHDRYFMDKIVDHLFVFRGQGEIENFPGNYSDFRAYEDSADVAQKEENKAEKKDWKQNNPTGNLSFNEQKEYQ KIEREIKDLEIEKAKIEQLFSDGKVADADIEKKANELQNIINKIDLKEERWFELSAKIEG
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=559, Percent_Identity=26.2969588550984, Blast_Score=184, Evalue=2e-46, Organism=Homo sapiens, GI10947135, Length=553, Percent_Identity=28.3905967450271, Blast_Score=172, Evalue=6e-43, Organism=Homo sapiens, GI69354671, Length=553, Percent_Identity=28.3905967450271, Blast_Score=172, Evalue=6e-43, Organism=Homo sapiens, GI10947137, Length=535, Percent_Identity=27.8504672897196, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI27881506, Length=535, Percent_Identity=27.8504672897196, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI6005701, Length=217, Percent_Identity=27.1889400921659, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI27477115, Length=217, Percent_Identity=27.1889400921659, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI27262624, Length=256, Percent_Identity=27.34375, Blast_Score=74, Evalue=3e-13, Organism=Homo sapiens, GI27262626, Length=256, Percent_Identity=27.34375, Blast_Score=74, Evalue=3e-13, Organism=Escherichia coli, GI2367384, Length=516, Percent_Identity=35.2713178294574, Blast_Score=335, Evalue=4e-93, Organism=Escherichia coli, GI1787182, Length=642, Percent_Identity=31.7757009345794, Blast_Score=295, Evalue=9e-81, Organism=Escherichia coli, GI1789751, Length=629, Percent_Identity=28.2988871224165, Blast_Score=269, Evalue=4e-73, Organism=Escherichia coli, GI1787041, Length=534, Percent_Identity=30.1498127340824, Blast_Score=237, Evalue=1e-63, Organism=Escherichia coli, GI1788506, Length=563, Percent_Identity=22.5577264653641, Blast_Score=119, Evalue=5e-28, Organism=Escherichia coli, GI48994943, Length=507, Percent_Identity=23.2741617357002, Blast_Score=105, Evalue=8e-24, Organism=Escherichia coli, GI1788225, Length=265, Percent_Identity=26.0377358490566, Blast_Score=90, Evalue=4e-19, Organism=Escherichia coli, GI87081782, Length=508, Percent_Identity=22.6377952755905, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1790525, Length=510, Percent_Identity=21.1764705882353, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1789864, Length=237, Percent_Identity=24.4725738396624, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1789873, Length=246, Percent_Identity=23.9837398373984, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1790467, Length=251, Percent_Identity=23.5059760956175, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1787089, Length=252, Percent_Identity=23.8095238095238, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789891, Length=207, Percent_Identity=25.6038647342995, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1787758, Length=192, Percent_Identity=28.125, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1786803, Length=235, Percent_Identity=24.2553191489362, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1786563, Length=234, Percent_Identity=25.2136752136752, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1789032, Length=234, Percent_Identity=26.9230769230769, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1789593, Length=168, Percent_Identity=26.1904761904762, Blast_Score=63, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17559834, Length=551, Percent_Identity=27.7676950998185, Blast_Score=208, Evalue=6e-54, Organism=Caenorhabditis elegans, GI17555318, Length=541, Percent_Identity=27.3567467652495, Blast_Score=176, Evalue=2e-44, Organism=Caenorhabditis elegans, GI17553372, Length=544, Percent_Identity=25.1838235294118, Blast_Score=158, Evalue=8e-39, Organism=Caenorhabditis elegans, GI71983523, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983516, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=5e-12, Organism=Caenorhabditis elegans, GI71983510, Length=248, Percent_Identity=28.2258064516129, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI25146777, Length=240, Percent_Identity=29.5833333333333, Blast_Score=66, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=526, Percent_Identity=27.1863117870722, Blast_Score=192, Evalue=2e-49, Organism=Saccharomyces cerevisiae, GI6321121, Length=420, Percent_Identity=28.8095238095238, Blast_Score=161, Evalue=3e-40, Organism=Saccharomyces cerevisiae, GI6325030, Length=382, Percent_Identity=28.2722513089005, Blast_Score=131, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6324314, Length=377, Percent_Identity=24.6684350132626, Blast_Score=122, Evalue=2e-28, Organism=Saccharomyces cerevisiae, GI6323278, Length=380, Percent_Identity=24.4736842105263, Blast_Score=115, Evalue=2e-26, Organism=Saccharomyces cerevisiae, GI6320266, Length=504, Percent_Identity=26.7857142857143, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24641342, Length=545, Percent_Identity=28.9908256880734, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI24666836, Length=533, Percent_Identity=26.4540337711069, Blast_Score=184, Evalue=2e-46, Organism=Drosophila melanogaster, GI24642252, Length=539, Percent_Identity=25.2319109461967, Blast_Score=173, Evalue=3e-43, Organism=Drosophila melanogaster, GI18859989, Length=539, Percent_Identity=25.2319109461967, Blast_Score=173, Evalue=3e-43, Organism=Drosophila melanogaster, GI221500365, Length=187, Percent_Identity=31.5508021390374, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007184, Length=187, Percent_Identity=31.5508021390374, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI24582014, Length=198, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=3e-12, Organism=Drosophila melanogaster, GI24582012, Length=198, Percent_Identity=27.2727272727273, Blast_Score=71, Evalue=3e-12, Organism=Drosophila melanogaster, GI85725262, Length=195, Percent_Identity=27.6923076923077, Blast_Score=71, Evalue=3e-12, Organism=Drosophila melanogaster, GI85724864, Length=179, Percent_Identity=27.3743016759777, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI24580555, Length=179, Percent_Identity=27.3743016759777, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI85816269, Length=178, Percent_Identity=27.5280898876405, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI24580553, Length=178, Percent_Identity=27.5280898876405, Blast_Score=70, Evalue=6e-12, Organism=Drosophila melanogaster, GI28574150, Length=196, Percent_Identity=27.0408163265306, Blast_Score=69, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007328, Length=196, Percent_Identity=27.0408163265306, Blast_Score=68, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 71921; Mature: 71921
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNYLSVENISKSFGERVLFDNISFGINKDQKIAFIAKNGSGKTTIMSIINGLDEPDTGQV CCCCCHHHHHHHHCCEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCHH VLRKGIRMAFLSQDNNLQDELTIEESIFASDNETLKIIEAYEKALENPDDEEAYQKAFDG HHHCCCEEEEECCCCCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC MDQHNAWDFETQYKQILFKLKLEDFKLKVKNLSGGQKKRLSLAIILINRPDLLILDEPTN CCCCCCCCHHHHHHHHHHHEEECCEEEEEECCCCCCCEEEEEEEEEECCCCEEEEECCCC HLDLEMIEWLESYFAKENITLFMVTHDRFFLERVCNEIIELDNGKLYQYKGNYSYYLEKK CCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECH EERIASENSSIDKAKNLFVKELEWMRRQPKARTTKSKSRQDDFYIIKEKAQSRRKENKVE HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCEE LEINMERMGSKIIELHKLSKKFKDRVILDNFSFDFQRGERIGIIGKNGTGKSTFLNLLTG EEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHC TIPPDSGRVVKGDTIKIGYYTQSGINPKPGQRVIDIIKEYGEYIPLAKGKIISASQLLER CCCCCCCEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECHHHHHHH FLFDAKKQYDYVEKLSGGELKRLYLCTVLIQNPNFLILDEPTNDLDIVTLNVLESFLLDY HHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCEEEEECCCCCCEEEEHHHHHHHHHCC PGCLLVVSHDRYFMDKIVDHLFVFRGQGEIENFPGNYSDFRAYEDSADVAQKEENKAEKK CCEEEEEECCHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH DWKQNNPTGNLSFNEQKEYQKIEREIKDLEIEKAKIEQLFSDGKVADADIEKKANELQNI HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH INKIDLKEERWFELSAKIEG HHHCCCCHHHEEEEEEEECC >Mature Secondary Structure MNYLSVENISKSFGERVLFDNISFGINKDQKIAFIAKNGSGKTTIMSIINGLDEPDTGQV CCCCCHHHHHHHHCCEEEECCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCHH VLRKGIRMAFLSQDNNLQDELTIEESIFASDNETLKIIEAYEKALENPDDEEAYQKAFDG HHHCCCEEEEECCCCCCCCCEEEHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC MDQHNAWDFETQYKQILFKLKLEDFKLKVKNLSGGQKKRLSLAIILINRPDLLILDEPTN CCCCCCCCHHHHHHHHHHHEEECCEEEEEECCCCCCCEEEEEEEEEECCCCEEEEECCCC HLDLEMIEWLESYFAKENITLFMVTHDRFFLERVCNEIIELDNGKLYQYKGNYSYYLEKK CCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCEEEEEECH EERIASENSSIDKAKNLFVKELEWMRRQPKARTTKSKSRQDDFYIIKEKAQSRRKENKVE HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCEE LEINMERMGSKIIELHKLSKKFKDRVILDNFSFDFQRGERIGIIGKNGTGKSTFLNLLTG EEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHC TIPPDSGRVVKGDTIKIGYYTQSGINPKPGQRVIDIIKEYGEYIPLAKGKIISASQLLER CCCCCCCEEEECCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEECHHHHHHH FLFDAKKQYDYVEKLSGGELKRLYLCTVLIQNPNFLILDEPTNDLDIVTLNVLESFLLDY HHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCEEEEECCCCCCEEEEHHHHHHHHHCC PGCLLVVSHDRYFMDKIVDHLFVFRGQGEIENFPGNYSDFRAYEDSADVAQKEENKAEKK CCEEEEEECCHHHHHHHHHHHHEECCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHH DWKQNNPTGNLSFNEQKEYQKIEREIKDLEIEKAKIEQLFSDGKVADADIEKKANELQNI HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH INKIDLKEERWFELSAKIEG HHHCCCCHHHEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9141694; 9384377 [H]