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The map label for this gene is ybbB [H]

Identifier: 146302679

GI number: 146302679

Start: 5984397

End: 5985275

Strand: Reverse

Name: ybbB [H]

Synonym: Fjoh_4952

Alternate gene names: 146302679

Gene position: 5985275-5984397 (Counterclockwise)

Preceding gene: 146302687

Following gene: 146302678

Centisome position: 98.17

GC content: 31.85

Gene sequence:

>879_bases
ATGAGTACAGCTAAAAATTTTTATAGAGAGATCGCGCCGCTTTCTGCCGGAGATAGTTTTTTGGTTTTTGACAGAGTAAA
AGACAGTTTTGATTTTCCGGTTCATTATCATCCTGAATTTGAGATTAATTTTATTTTAAATGGAAAAGGAGTAAGGCGTG
TTGTGGGTGATAATATTGAGGAAATTGATAACGTCGAATTAGTTTTAATTGGTCCAAATTTATATCACGGCTGGGAACTG
AATAAGTGCACAAATAAAAAAATACATGAAATTACGATTCAGTTTCATAATGATTTATTTCATGAATCTTTGCTTGCACG
ACGTATTATGAACCCAATTCGGGATATGTTTAATCGTTCGATTCACGGAATTTTATTTTCTAAAAAAACAGCTGAAGAAT
TGACGCCAAGGCTTGTGAGGCTTTCTAAACTGGATGGTATTGATTATTTTTTAGAAATTACTTCCTTATTATATGATCTT
GCCAATTCAAGAAATCAAAGACTGCTTTCTACTTATACGGTAGATTATGATAAGTTTGATGATTATGATAAAATGAAACT
GGTATATGAATATGTACAAAAACATTTTGCTGAAAAAATTACTTTAGAAGATGTAGCGAATGTTGCCAGTATGTCGATTA
TTTCTTTTAACCGATTTATAAAAAAGCGCACCGGAAAAACTTTTGTTAATTATATAAATGATATCAGAATTGGATATGCT
GCGCGCTGGCTTGTAGAGAAAGATATGAGTGTTTCTGAAGTTGCATTTAAATCCGGCTTTAATAATATTGCGAACTTCAA
TCGCAGTTTTAAGGCTATTAAAAATTGTACACCAAGCCAATACAGGGAAGATTTTTCTGGATTGAAGCGTATATTATAA

Upstream 100 bases:

>100_bases
AATGTATGTTTATAGCTTAATCAATATTATTTTATCAATTATATATCATATTATTGCAGGAAAAAAGAAATCTAATTTTG
CTAAAACAGTTTTTAAGAAA

Downstream 100 bases:

>100_bases
TGATACTTTTTTTGCACAAGTAAATATTATTTTTAACGAAATCGTTTGATTTTGATGATTTCGTTACTTTTTATGCATAA
TTTTTAAGGAATAAAGTTGT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSTAKNFYREIAPLSAGDSFLVFDRVKDSFDFPVHYHPEFEINFILNGKGVRRVVGDNIEEIDNVELVLIGPNLYHGWEL
NKCTNKKIHEITIQFHNDLFHESLLARRIMNPIRDMFNRSIHGILFSKKTAEELTPRLVRLSKLDGIDYFLEITSLLYDL
ANSRNQRLLSTYTVDYDKFDDYDKMKLVYEYVQKHFAEKITLEDVANVASMSIISFNRFIKKRTGKTFVNYINDIRIGYA
ARWLVEKDMSVSEVAFKSGFNNIANFNRSFKAIKNCTPSQYREDFSGLKRIL

Sequences:

>Translated_292_residues
MSTAKNFYREIAPLSAGDSFLVFDRVKDSFDFPVHYHPEFEINFILNGKGVRRVVGDNIEEIDNVELVLIGPNLYHGWEL
NKCTNKKIHEITIQFHNDLFHESLLARRIMNPIRDMFNRSIHGILFSKKTAEELTPRLVRLSKLDGIDYFLEITSLLYDL
ANSRNQRLLSTYTVDYDKFDDYDKMKLVYEYVQKHFAEKITLEDVANVASMSIISFNRFIKKRTGKTFVNYINDIRIGYA
ARWLVEKDMSVSEVAFKSGFNNIANFNRSFKAIKNCTPSQYREDFSGLKRIL
>Mature_291_residues
STAKNFYREIAPLSAGDSFLVFDRVKDSFDFPVHYHPEFEINFILNGKGVRRVVGDNIEEIDNVELVLIGPNLYHGWELN
KCTNKKIHEITIQFHNDLFHESLLARRIMNPIRDMFNRSIHGILFSKKTAEELTPRLVRLSKLDGIDYFLEITSLLYDLA
NSRNQRLLSTYTVDYDKFDDYDKMKLVYEYVQKHFAEKITLEDVANVASMSIISFNRFIKKRTGKTFVNYINDIRIGYAA
RWLVEKDMSVSEVAFKSGFNNIANFNRSFKAIKNCTPSQYREDFSGLKRIL

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002491 [H]

Pfam domain/function: PF00165 HTH_AraC; PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 34147; Mature: 34015

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAKNFYREIAPLSAGDSFLVFDRVKDSFDFPVHYHPEFEINFILNGKGVRRVVGDNIE
CCCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEECCCEEEEEEECCCCHHHHHCCCHH
EIDNVELVLIGPNLYHGWELNKCTNKKIHEITIQFHNDLFHESLLARRIMNPIRDMFNRS
HHCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCH
IHGILFSKKTAEELTPRLVRLSKLDGIDYFLEITSLLYDLANSRNQRLLSTYTVDYDKFD
HHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEHEEEECCCCCC
DYDKMKLVYEYVQKHFAEKITLEDVANVASMSIISFNRFIKKRTGKTFVNYINDIRIGYA
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ARWLVEKDMSVSEVAFKSGFNNIANFNRSFKAIKNCTPSQYREDFSGLKRIL
HHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STAKNFYREIAPLSAGDSFLVFDRVKDSFDFPVHYHPEFEINFILNGKGVRRVVGDNIE
CCHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEEECCCEEEEEEECCCCHHHHHCCCHH
EIDNVELVLIGPNLYHGWELNKCTNKKIHEITIQFHNDLFHESLLARRIMNPIRDMFNRS
HHCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCH
IHGILFSKKTAEELTPRLVRLSKLDGIDYFLEITSLLYDLANSRNQRLLSTYTVDYDKFD
HHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEHEEEECCCCCC
DYDKMKLVYEYVQKHFAEKITLEDVANVASMSIISFNRFIKKRTGKTFVNYINDIRIGYA
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
ARWLVEKDMSVSEVAFKSGFNNIANFNRSFKAIKNCTPSQYREDFSGLKRIL
HHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]