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The map label for this gene is rpsT

Identifier: 146302665

GI number: 146302665

Start: 5964785

End: 5965036

Strand: Reverse

Name: rpsT

Synonym: Fjoh_4938

Alternate gene names: 146302665

Gene position: 5965036-5964785 (Counterclockwise)

Preceding gene: 146302666

Following gene: 146302662

Centisome position: 97.84

GC content: 29.76

Gene sequence:

>252_bases
ATGGCAAATCATAAGTCAGCATTAAAAAGAATCAGAAGTAACGAAAAAAGAAGAGTTCTTAACAGATATCAGCATAAAAC
TACTCGTAATGCTATTAAAGCATTAAGATTAGCTACTGATAAATCTGATGCTGCTGCTAAATTATCAACTGTAATCTCTA
TGATCGATAAATTAGCTAAAAAGAACATCATTCATGATAACAAAGCTTCTAACTTGAAGTCTAAATTAACGAAACACGTT
GCTAAATTGTAA

Upstream 100 bases:

>100_bases
GTTTTATTAGTTAAAACCAAAGTGATTGTTTACAGTTGTGGGAGGTTTTTCTTTTTTAACTAGTATTTATAATAATTATT
ACATCTAAAATTAAAAGAAA

Downstream 100 bases:

>100_bases
TTTAAATACAATTATAAGATATAAAAAGTCCTCTTTTCGAGGACTTTTTTTTGTTTAGGTATTATTGGAATTTTAGTTTA
AAGATTCCTGAATCAATATG

Product: 30S ribosomal protein S20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 83; Mature: 82

Protein sequence:

>83_residues
MANHKSALKRIRSNEKRRVLNRYQHKTTRNAIKALRLATDKSDAAAKLSTVISMIDKLAKKNIIHDNKASNLKSKLTKHV
AKL

Sequences:

>Translated_83_residues
MANHKSALKRIRSNEKRRVLNRYQHKTTRNAIKALRLATDKSDAAAKLSTVISMIDKLAKKNIIHDNKASNLKSKLTKHV
AKL
>Mature_82_residues
ANHKSALKRIRSNEKRRVLNRYQHKTTRNAIKALRLATDKSDAAAKLSTVISMIDKLAKKNIIHDNKASNLKSKLTKHVA
KL

Specific function: Binds directly to 16S ribosomal RNA

COG id: COG0268

COG function: function code J; Ribosomal protein S20

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S20P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RS20_FLAJ1 (A5FA35)

Other databases:

- EMBL:   CP000685
- RefSeq:   YP_001197256.1
- ProteinModelPortal:   A5FA35
- SMR:   A5FA35
- STRING:   A5FA35
- GeneID:   5094208
- GenomeReviews:   CP000685_GR
- KEGG:   fjo:Fjoh_4938
- eggNOG:   NOG72521
- HOGENOM:   HBG734145
- OMA:   NRYQHKT
- ProtClustDB:   PRK00239
- BioCyc:   FJOH376686:FJOH_4938-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00500
- InterPro:   IPR002583
- Gene3D:   G3DSA:1.20.58.110
- ProDom:   PD004231
- TIGRFAMs:   TIGR00029

Pfam domain/function: PF01649 Ribosomal_S20p; SSF46992 Ribosomal_S20p

EC number: NA

Molecular weight: Translated: 9416; Mature: 9285

Theoretical pI: Translated: 11.84; Mature: 11.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANHKSALKRIRSNEKRRVLNRYQHKTTRNAIKALRLATDKSDAAAKLSTVISMIDKLAK
CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KNIIHDNKASNLKSKLTKHVAKL
HHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ANHKSALKRIRSNEKRRVLNRYQHKTTRNAIKALRLATDKSDAAAKLSTVISMIDKLAK
CCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
KNIIHDNKASNLKSKLTKHVAKL
HHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA