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The map label for this gene is lytT [H]

Identifier: 146302635

GI number: 146302635

Start: 5931425

End: 5932192

Strand: Reverse

Name: lytT [H]

Synonym: Fjoh_4908

Alternate gene names: 146302635

Gene position: 5932192-5931425 (Counterclockwise)

Preceding gene: 146302636

Following gene: 146302632

Centisome position: 97.3

GC content: 32.94

Gene sequence:

>768_bases
ATGGTCACATTAATTATAGAAGACGAAAAACCCGCAGCGAGACTGCTGCAAAGAAAACTTGAAAAGTTAGATGTTACAGT
AGAAACGATGCTTCATTCAGTTGAAGAATCGGTAGAGTGGTTTTCAAAGAACCAGCATCCGGATTTGATTTTTTTGGATA
TTCAGCTGTCAGATGGTTTGTCGTTTGAAATTTTTGAGAAAATAGATATCAAAAGCGCAATTATATTTACAACAGCATAC
GATGAGTATGCTTTAAAAGCTTTTAAATTAAACAGTATTGATTATCTTTTAAAACCAATTGATGAAGATGATCTCGAAGC
TGCAGTTACAAAATTTAAATCAAGAATTCCTAAAGCTCCTGCTGAAAATTCAAACATGCAGTTAGATTTTGAGCAGATTC
GCCAGATGTTGTCAAATCCGTTTGAGAAAACATATAAAAAGCGTTTTACAGTTAAAATTGGGCAGCATTTAAAAGTAATA
AACACAGAAGAAATCGAATGTTTTTTTAGTGAAAACAAAGGAACATACATTCATACTTTTGAAAACCGTGATTATTTAAT
CGATTCTACTTTAGAAATTCTGGAGCAGGAACTAGACAAAAAGGATTTCTTTCGCGTAAGCAGAAAATTTATTGTTCCAT
TAAAAGCAATTAAAGAAATTCAGGTTTACACCAATTCCCGTTTAAAAGTTATTCTGCCGAGTTATAAAGATGATGAGGTA
ATCGTGAGCCGTGAGAAAGTGCAAGATTTTAAAGCTTGGCTGGGATAA

Upstream 100 bases:

>100_bases
AGCAGAAAAAAATCCAAAAATACATGGAAAAAGAAGCTGCAAATACCAATAAATGGGAGTAATTTTGATTTAATTTTTTT
TCAAATTTTACAATATATAA

Downstream 100 bases:

>100_bases
AATCCAAACAAAAAATAGAAATTCAGCAGATTTTAATTCATTTTATCGATAATAGCCCCAACGGAGTGAAATATTTATAG
AATTACAATAAGCAAATGAA

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MVTLIIEDEKPAARLLQRKLEKLDVTVETMLHSVEESVEWFSKNQHPDLIFLDIQLSDGLSFEIFEKIDIKSAIIFTTAY
DEYALKAFKLNSIDYLLKPIDEDDLEAAVTKFKSRIPKAPAENSNMQLDFEQIRQMLSNPFEKTYKKRFTVKIGQHLKVI
NTEEIECFFSENKGTYIHTFENRDYLIDSTLEILEQELDKKDFFRVSRKFIVPLKAIKEIQVYTNSRLKVILPSYKDDEV
IVSREKVQDFKAWLG

Sequences:

>Translated_255_residues
MVTLIIEDEKPAARLLQRKLEKLDVTVETMLHSVEESVEWFSKNQHPDLIFLDIQLSDGLSFEIFEKIDIKSAIIFTTAY
DEYALKAFKLNSIDYLLKPIDEDDLEAAVTKFKSRIPKAPAENSNMQLDFEQIRQMLSNPFEKTYKKRFTVKIGQHLKVI
NTEEIECFFSENKGTYIHTFENRDYLIDSTLEILEQELDKKDFFRVSRKFIVPLKAIKEIQVYTNSRLKVILPSYKDDEV
IVSREKVQDFKAWLG
>Mature_255_residues
MVTLIIEDEKPAARLLQRKLEKLDVTVETMLHSVEESVEWFSKNQHPDLIFLDIQLSDGLSFEIFEKIDIKSAIIFTTAY
DEYALKAFKLNSIDYLLKPIDEDDLEAAVTKFKSRIPKAPAENSNMQLDFEQIRQMLSNPFEKTYKKRFTVKIGQHLKVI
NTEEIECFFSENKGTYIHTFENRDYLIDSTLEILEQELDKKDFFRVSRKFIVPLKAIKEIQVYTNSRLKVILPSYKDDEV
IVSREKVQDFKAWLG

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082052, Length=263, Percent_Identity=27.3764258555133, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788724, Length=220, Percent_Identity=28.6363636363636, Blast_Score=71, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29960; Mature: 29960

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTLIIEDEKPAARLLQRKLEKLDVTVETMLHSVEESVEWFSKNQHPDLIFLDIQLSDGL
CEEEEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC
SFEIFEKIDIKSAIIFTTAYDEYALKAFKLNSIDYLLKPIDEDDLEAAVTKFKSRIPKAP
CEEHHHHCCCCEEEEEEEECHHHHHHEEEECCHHHHHCCCCCHHHHHHHHHHHHHCCCCC
AENSNMQLDFEQIRQMLSNPFEKTYKKRFTVKIGQHLKVINTEEIECFFSENKGTYIHTF
CCCCCCEECHHHHHHHHHCHHHHHHHHHHEEEECCEEEEECCCEEEEEEECCCCCEEEEE
ENRDYLIDSTLEILEQELDKKDFFRVSRKFIVPLKAIKEIQVYTNSRLKVILPSYKDDEV
CCCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCCE
IVSREKVQDFKAWLG
EEEHHHHHHHHHHCC
>Mature Secondary Structure
MVTLIIEDEKPAARLLQRKLEKLDVTVETMLHSVEESVEWFSKNQHPDLIFLDIQLSDGL
CEEEEEECCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCC
SFEIFEKIDIKSAIIFTTAYDEYALKAFKLNSIDYLLKPIDEDDLEAAVTKFKSRIPKAP
CEEHHHHCCCCEEEEEEEECHHHHHHEEEECCHHHHHCCCCCHHHHHHHHHHHHHCCCCC
AENSNMQLDFEQIRQMLSNPFEKTYKKRFTVKIGQHLKVINTEEIECFFSENKGTYIHTF
CCCCCCEECHHHHHHHHHCHHHHHHHHHHEEEECCEEEEECCCEEEEEEECCCCCEEEEE
ENRDYLIDSTLEILEQELDKKDFFRVSRKFIVPLKAIKEIQVYTNSRLKVILPSYKDDEV
CCCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHEEECCEEEEEECCCCCCCE
IVSREKVQDFKAWLG
EEEHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]