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The map label for this gene is 146302518

Identifier: 146302518

GI number: 146302518

Start: 5790580

End: 5791128

Strand: Reverse

Name: 146302518

Synonym: Fjoh_4791

Alternate gene names: NA

Gene position: 5791128-5790580 (Counterclockwise)

Preceding gene: 146302519

Following gene: 146302517

Centisome position: 94.99

GC content: 29.87

Gene sequence:

>549_bases
ATGAATAACAAAAATGAAGCTGCTTTTGAAAAGGTTTTTAAAACCTACTTCAAAAGCCTTCATGCATTTGCCTATACTTT
TATGAAAGATGAAATTATTGCAGAAGAAATCGTGCAGAATGTATTCTTTCGAATTTGGGAAAAAAAGGAACAATTGCAGA
TTGATGATTCATTAAAGTCTTATTTGTATCGATCTGTTCATAACGAAAGTTTAAATCATATTAAACATTTAAAAGTAAAA
ACTTCTTTTCAATTAGAGTATTCAGGTAATATGGAACCTTCAAATCAAGATGCATCAAATCAAATGATTGCCGCCGAACT
TGAAACCGAAATTCAAAAAGCAATTAATGAATTACCACAGCAGTGCCGTATCATTTTTCAAATGAGCCGTTTTGAGCAGC
TTAAATACCAGCAAATTGCAGATCAATTGAATATTTCCATCAAAACAGTTGAAAATCAGATGGGCAAAGCTCTTAAAGTA
ATGCGTTTAAAACTAATAGAATATCTTCCTTTTTTATTGTTTTTAATCAATTTAATTCGAAGATCATGA

Upstream 100 bases:

>100_bases
TTTCAATTAATCAAAATATATTAAATATAAAAAGTATCTATCTTTGATTGAATGTCAAACTGTTTTTGTGAAGTATAGTA
ATACAGATCATATTAATTTT

Downstream 100 bases:

>100_bases
GCCAAAATAATAGGAATATGAATGATGATATACTAGTGAAATATATAGTTGGCGAAACTGATGCAGACGAAAATGCAATG
GTAAAAAAATGGCTGGATGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-H Factor; RNA Polymerase Sigma Factor Sigma-70 Family; ECF-Type RNA Polymerase Sigma Factor; Sigma-; ECF Family RNA Polymerase Sigma-70 Factor; ECF-Type Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF-Type RNA Polymerase; ECF Sigma Factor; Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MNNKNEAAFEKVFKTYFKSLHAFAYTFMKDEIIAEEIVQNVFFRIWEKKEQLQIDDSLKSYLYRSVHNESLNHIKHLKVK
TSFQLEYSGNMEPSNQDASNQMIAAELETEIQKAINELPQQCRIIFQMSRFEQLKYQQIADQLNISIKTVENQMGKALKV
MRLKLIEYLPFLLFLINLIRRS

Sequences:

>Translated_182_residues
MNNKNEAAFEKVFKTYFKSLHAFAYTFMKDEIIAEEIVQNVFFRIWEKKEQLQIDDSLKSYLYRSVHNESLNHIKHLKVK
TSFQLEYSGNMEPSNQDASNQMIAAELETEIQKAINELPQQCRIIFQMSRFEQLKYQQIADQLNISIKTVENQMGKALKV
MRLKLIEYLPFLLFLINLIRRS
>Mature_182_residues
MNNKNEAAFEKVFKTYFKSLHAFAYTFMKDEIIAEEIVQNVFFRIWEKKEQLQIDDSLKSYLYRSVHNESLNHIKHLKVK
TSFQLEYSGNMEPSNQDASNQMIAAELETEIQKAINELPQQCRIIFQMSRFEQLKYQQIADQLNISIKTVENQMGKALKV
MRLKLIEYLPFLLFLINLIRRS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21636; Mature: 21636

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNKNEAAFEKVFKTYFKSLHAFAYTFMKDEIIAEEIVQNVFFRIWEKKEQLQIDDSLKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLYRSVHNESLNHIKHLKVKTSFQLEYSGNMEPSNQDASNQMIAAELETEIQKAINELPQ
HHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QCRIIFQMSRFEQLKYQQIADQLNISIKTVENQMGKALKVMRLKLIEYLPFLLFLINLIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RS
CC
>Mature Secondary Structure
MNNKNEAAFEKVFKTYFKSLHAFAYTFMKDEIIAEEIVQNVFFRIWEKKEQLQIDDSLKS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLYRSVHNESLNHIKHLKVKTSFQLEYSGNMEPSNQDASNQMIAAELETEIQKAINELPQ
HHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QCRIIFQMSRFEQLKYQQIADQLNISIKTVENQMGKALKVMRLKLIEYLPFLLFLINLIR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RS
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA