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The map label for this gene is rpoE [H]

Identifier: 146302502

GI number: 146302502

Start: 5769645

End: 5770187

Strand: Direct

Name: rpoE [H]

Synonym: Fjoh_4775

Alternate gene names: 146302502

Gene position: 5769645-5770187 (Clockwise)

Preceding gene: 146302501

Following gene: 146302503

Centisome position: 94.63

GC content: 30.76

Gene sequence:

>543_bases
TTGATCGACGAGAAGGAATTTATACAACAATTATTAGATCCTAAAACGCAGAACACAGCGTTTCAAAAACTTATATCTGA
TTATCAAAAACCTTTGTATTCTCATATTCGAAACATTGTTTTGAATCATGATGATACAGATGATGTTTTGCAGAATACTT
TCGTAAAGGTATTTCAGTACTTAAAAAACTTTAAGGGAGAAAGTAAACTTTTCTCGTGGATGTATCGAATTGCAACAAAC
GAAGCGTTGACTTTTTTAAATCAAAAAGCAAAATTAAAAGGCATAACTTCTGAAGATTTACAAAATAAAACTATCGACAA
TTTAAAGTCTGATGTTTATTTTGACGGCGATGAAATCCAGATCAAACTTCAAAAAGCAATTGTTACACTGCCCGAAAAGC
AGCAATTGGTTTTTAAAATGAAATATTTCGAAGAATTAAAATACGAAGAAATCGCAGAAATTTTAGGAACGTCAGTTGGC
GCCTTAAAAGCATCTTACCACCATGCGGTAAAAAAAATTGAATTATATGTTACGTCAAATTAA

Upstream 100 bases:

>100_bases
AGAAGAAGAACAGTCTGAATTTTAATTTTTTTTAAGGTTGATTAAACCTTTTGTATAAATTGTATTCTAACTGATTATAA
AGTTTGATAAATCAAGAAGT

Downstream 100 bases:

>100_bases
ACCTTTTATAGCTAATATTATCTTATAGACATTATGAAAGAATTTAAATTAGAAAACGAACCGAAAATAACAGCTGGATT
TAAAACTCCAGATCATTATT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MIDEKEFIQQLLDPKTQNTAFQKLISDYQKPLYSHIRNIVLNHDDTDDVLQNTFVKVFQYLKNFKGESKLFSWMYRIATN
EALTFLNQKAKLKGITSEDLQNKTIDNLKSDVYFDGDEIQIKLQKAIVTLPEKQQLVFKMKYFEELKYEEIAEILGTSVG
ALKASYHHAVKKIELYVTSN

Sequences:

>Translated_180_residues
MIDEKEFIQQLLDPKTQNTAFQKLISDYQKPLYSHIRNIVLNHDDTDDVLQNTFVKVFQYLKNFKGESKLFSWMYRIATN
EALTFLNQKAKLKGITSEDLQNKTIDNLKSDVYFDGDEIQIKLQKAIVTLPEKQQLVFKMKYFEELKYEEIAEILGTSVG
ALKASYHHAVKKIELYVTSN
>Mature_180_residues
MIDEKEFIQQLLDPKTQNTAFQKLISDYQKPLYSHIRNIVLNHDDTDDVLQNTFVKVFQYLKNFKGESKLFSWMYRIATN
EALTFLNQKAKLKGITSEDLQNKTIDNLKSDVYFDGDEIQIKLQKAIVTLPEKQQLVFKMKYFEELKYEEIAEILGTSVG
ALKASYHHAVKKIELYVTSN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=170, Percent_Identity=27.6470588235294, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21036; Mature: 21036

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDEKEFIQQLLDPKTQNTAFQKLISDYQKPLYSHIRNIVLNHDDTDDVLQNTFVKVFQY
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LKNFKGESKLFSWMYRIATNEALTFLNQKAKLKGITSEDLQNKTIDNLKSDVYFDGDEIQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEECCCHHE
IKLQKAIVTLPEKQQLVFKMKYFEELKYEEIAEILGTSVGALKASYHHAVKKIELYVTSN
EEHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECC
>Mature Secondary Structure
MIDEKEFIQQLLDPKTQNTAFQKLISDYQKPLYSHIRNIVLNHDDTDDVLQNTFVKVFQY
CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
LKNFKGESKLFSWMYRIATNEALTFLNQKAKLKGITSEDLQNKTIDNLKSDVYFDGDEIQ
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEECCCHHE
IKLQKAIVTLPEKQQLVFKMKYFEELKYEEIAEILGTSVGALKASYHHAVKKIELYVTSN
EEHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]