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The map label for this gene is rtcB [H]

Identifier: 146302472

GI number: 146302472

Start: 5734275

End: 5735696

Strand: Reverse

Name: rtcB [H]

Synonym: Fjoh_4745

Alternate gene names: 146302472

Gene position: 5735696-5734275 (Counterclockwise)

Preceding gene: 146302473

Following gene: 146302471

Centisome position: 94.08

GC content: 41.49

Gene sequence:

>1422_bases
ATGAAAACACAAATAAACGGTACAGATATATTAGAATTAGGATTCCCAGAAGGAAAAATAATTGGAATTGCCTTAAAAAT
AAACAGCAAAAGAAACGGATTCACAAGAGACGAAATGATTGCCAATTTCAAAAACGTCTTAGAAACTCCAGAAAACTATA
TAGACGATAAAATCTTCAGCAAACTGGCTGTGGCTTTAATCGAAAAATCGAATGAAAAACCAGAAGATTTCATTGCTTTA
AATCAGAATCCGAATGCGTATTCGGCTTACGGATTGGATCATATCGAAGACGGAGCCAGAAAACAAATGGAAGTGGCCAT
GAAACTGCCAGTTACCGTTGCGGGAGCTTTAATGCCAGACGCACACCAAGGTTACGGATTACCAATTGGCGGAGTTTTAG
CCACAAAAAATGCCATTATTCCGTATGGTGTTGGAGTTGATATTGGATGTAGAATGGCGTTGTCGGTTTATGATATTCCA
GAGGATTTTTACTTTGAAAACGAAGCGAAGTTCAAAAAAGAATTAATTACGAATTCCATTTTTGGAGCGGGTCACGGATT
TCACGGTCAGTACAAATCAGATCATGCGGTTTTAGAGAACGAAACGTTTAATATGAATCCGTTTGTGAAGAATTTGAAAG
ATAAAGCCTGGTCGCAATTAGGATCTTCGGGTGGCGGGAATCACTTTGTGGAATTCGGAATCATGGAATTTGCGAAAGAC
GATGCGGTCTTGAATATCCCAAAAGGAAAATACGTCGCTTTGTTAACGCATTCTGGTTCACGCGGAATGGGAGCAACCAT
TGCCGGACATTATACTAAAATAGCCAAAGACGAATGTAAACTTCCAGAAGTTGCCAAAAACTTGGCGTATCTGGATATGA
ACTCGCAATTAGGACAAGAATACTGGCTTGCGATGAATTTGGCGGGAGATTACGCTTCGGCTTGTCATGAGATTATCCAT
AACAAAATGGAACGCGCTTTGGGTGCGACGATTTTAGCCAAAGTCGAAAACCATCATAATTTTGCCTGGAAAGAAATCTG
GAACGGCGAAGAAGTGATCGTACATAGAAAAGGAGCAACCCCAGCCGGAAAAGGCGTTATGGGAATCATTCCGGGAAGTA
TGACCGCACCGGGATTTTTGGTGAGAGGAAAAGGTGAGGAGAATGCCATTAATTCGGCTTCGCATGGAGCAGGAAGACAA
ATGAGCAGAACCCAAGCCATAAAAAACATTACACAAACCGAAATGAAATCGATACTGAGAGATCATGGCGTTACGCTTAT
TGGAGCAGGTCTGGACGAAGCTCCAATGGCGTATAAAGATATCAATCAGGTTATGGAAGCGCAGAAAGAGTTAGTCGATG
TTGTTGCCAAATTCACGCCGAAACTGGTTAGAATGGCTGATGACGGAAGCAAGGAAGACTAA

Upstream 100 bases:

>100_bases
CAACAAAAAAATGGTAGTCGATTTTAAAATAACTGCGCAGCAGCAAAGAACCTTTGCACCTATGAACCTCTGGCACTTTG
TCCCTTAAAAAAGAAAAAAA

Downstream 100 bases:

>100_bases
GTTTTTTTAGTATTCAGTCTCAGTCACAGTTTTCAGTGTAGAGGTGTGCTGCAGTTCGTGTAACAGAATATGAATAAAAT
TAAAATAAATCCAAAAGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MKTQINGTDILELGFPEGKIIGIALKINSKRNGFTRDEMIANFKNVLETPENYIDDKIFSKLAVALIEKSNEKPEDFIAL
NQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPDAHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIP
EDFYFENEAKFKKELITNSIFGAGHGFHGQYKSDHAVLENETFNMNPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
DAVLNIPKGKYVALLTHSGSRGMGATIAGHYTKIAKDECKLPEVAKNLAYLDMNSQLGQEYWLAMNLAGDYASACHEIIH
NKMERALGATILAKVENHHNFAWKEIWNGEEVIVHRKGATPAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQ
MSRTQAIKNITQTEMKSILRDHGVTLIGAGLDEAPMAYKDINQVMEAQKELVDVVAKFTPKLVRMADDGSKED

Sequences:

>Translated_473_residues
MKTQINGTDILELGFPEGKIIGIALKINSKRNGFTRDEMIANFKNVLETPENYIDDKIFSKLAVALIEKSNEKPEDFIAL
NQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPDAHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIP
EDFYFENEAKFKKELITNSIFGAGHGFHGQYKSDHAVLENETFNMNPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
DAVLNIPKGKYVALLTHSGSRGMGATIAGHYTKIAKDECKLPEVAKNLAYLDMNSQLGQEYWLAMNLAGDYASACHEIIH
NKMERALGATILAKVENHHNFAWKEIWNGEEVIVHRKGATPAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQ
MSRTQAIKNITQTEMKSILRDHGVTLIGAGLDEAPMAYKDINQVMEAQKELVDVVAKFTPKLVRMADDGSKED
>Mature_473_residues
MKTQINGTDILELGFPEGKIIGIALKINSKRNGFTRDEMIANFKNVLETPENYIDDKIFSKLAVALIEKSNEKPEDFIAL
NQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPDAHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIP
EDFYFENEAKFKKELITNSIFGAGHGFHGQYKSDHAVLENETFNMNPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
DAVLNIPKGKYVALLTHSGSRGMGATIAGHYTKIAKDECKLPEVAKNLAYLDMNSQLGQEYWLAMNLAGDYASACHEIIH
NKMERALGATILAKVENHHNFAWKEIWNGEEVIVHRKGATPAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQ
MSRTQAIKNITQTEMKSILRDHGVTLIGAGLDEAPMAYKDINQVMEAQKELVDVVAKFTPKLVRMADDGSKED

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=427, Percent_Identity=24.824355971897, Blast_Score=87, Evalue=4e-17,
Organism=Escherichia coli, GI2367224, Length=405, Percent_Identity=35.0617283950617, Blast_Score=186, Evalue=3e-48,
Organism=Caenorhabditis elegans, GI17506665, Length=427, Percent_Identity=25.0585480093677, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24585217, Length=430, Percent_Identity=24.8837209302326, Blast_Score=90, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 51691; Mature: 51691

Theoretical pI: Translated: 6.46; Mature: 6.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQINGTDILELGFPEGKIIGIALKINSKRNGFTRDEMIANFKNVLETPENYIDDKIFS
CCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
KLAVALIEKSNEKPEDFIALNQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPD
HHHHHHHHCCCCCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHCCHHEECCCCCC
AHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIPEDFYFENEAKFKKELITNSI
CCCCCCCCCCCCEECCCCEEEECCCCCCCCEEEEEEEECCHHHCCCCHHHHHHHHHHHHH
FGAGHGFHGQYKSDHAVLENETFNMNPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
HCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCC
DAVLNIPKGKYVALLTHSGSRGMGATIAGHYTKIAKDECKLPEVAKNLAYLDMNSQLGQE
CCEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHEEEECCHHHCCE
YWLAMNLAGDYASACHEIIHNKMERALGATILAKVENHHNFAWKEIWNGEEVIVHRKGAT
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCC
PAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQMSRTQAIKNITQTEMKSILR
CCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DHGVTLIGAGLDEAPMAYKDINQVMEAQKELVDVVAKFTPKLVRMADDGSKED
HCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCCCCCC
>Mature Secondary Structure
MKTQINGTDILELGFPEGKIIGIALKINSKRNGFTRDEMIANFKNVLETPENYIDDKIFS
CCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
KLAVALIEKSNEKPEDFIALNQNPNAYSAYGLDHIEDGARKQMEVAMKLPVTVAGALMPD
HHHHHHHHCCCCCCCCEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHCCHHEECCCCCC
AHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSVYDIPEDFYFENEAKFKKELITNSI
CCCCCCCCCCCCEECCCCEEEECCCCCCCCEEEEEEEECCHHHCCCCHHHHHHHHHHHHH
FGAGHGFHGQYKSDHAVLENETFNMNPFVKNLKDKAWSQLGSSGGGNHFVEFGIMEFAKD
HCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHCCC
DAVLNIPKGKYVALLTHSGSRGMGATIAGHYTKIAKDECKLPEVAKNLAYLDMNSQLGQE
CCEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHEEEECCHHHCCE
YWLAMNLAGDYASACHEIIHNKMERALGATILAKVENHHNFAWKEIWNGEEVIVHRKGAT
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCEEEEEECCCC
PAGKGVMGIIPGSMTAPGFLVRGKGEENAINSASHGAGRQMSRTQAIKNITQTEMKSILR
CCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DHGVTLIGAGLDEAPMAYKDINQVMEAQKELVDVVAKFTPKLVRMADDGSKED
HCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]