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The map label for this gene is des6 [H]

Identifier: 146302331

GI number: 146302331

Start: 5568043

End: 5569203

Strand: Reverse

Name: des6 [H]

Synonym: Fjoh_4604

Alternate gene names: 146302331

Gene position: 5569203-5568043 (Counterclockwise)

Preceding gene: 146302334

Following gene: 146302328

Centisome position: 91.35

GC content: 33.85

Gene sequence:

>1161_bases
ATGTGTTTTAACTTTTTTTTATTAAATTTGATAGTACAATTTCTAGCAATACCAATTATGGAAAAATTAAAACGCCCGGT
TTATCTTAAAGCTGGTTCTGATGATTTTTTTAAAAAGATGCGCACAGAAGTGAACGAAACTGTTTTACAAAACTCATCAT
TATACCATTTTAATGTAATAAAGTCTTTAGGTCTTTTGGTTCTGTTTTTTTTATTTTATAGCTGTATTTTATTTTTTGGC
AGCAATACATCCTTACTTTTTCTTTTTTATATTTTGTGTGGTTTTACCATGATTGTCCTTTTCATAAATGCCTTTCATGA
TGCTGCTCACGGAGCTTTGTTTAAAAAAACAAAACACAATGAATGGTTCTTGTATGTTCTGGAACTTTTTGGCAGCAATC
ACTGGCTTTGGATGCGCCGGCATATCAATCTCCATCATGCTTATCCCAATGTGCCAGATTGGGATATCGACATTAAACAA
AGTGACATTATCAGGATTTTTCCAAACAGTCCGTTATTCGAATACCATAAATATCAGCATATTTATATGTGGTTTATTTA
TCCGCTTTACAGCTTAAACTGGATTTATATACGTGATTTTAAAGATTTTTTCGGCACTAAAAATAACTATGTAAAAAAAG
TCGTTGAAGTAATTCCGAGAAAGCAGATTTTTATACTCTTTGCGGCAAAAATCATCAATCTGTTTTATATACTTTTTATT
CCAATGCTGGTTTTAAATCAGCCTTGGTATTTGGTTTTGGCAGGCTGGTTTGCCATGCACTTATTTGGAAGTGTTTTGGG
AGTCGTTGCTCTAGTTTCTACACATGTTGATGAAGATGCACATTTCCCTGTAACTGACGAAGACGGAAATCTTTCGGCTA
CCTGGGCAGTTCACCAAATGATTGTTACCAAAGATTTTAGCACCAACAGTAAACTGGCTAATTTTTTATACGGCGGTTTT
ACACATCATGTAGCACACCACCTTTTTCCGGGAGTCGGTCATACTTATTATCCTTATATAACACCTATTATAATGCGTTA
TGCAAAAGAATACGATCTTCCGTACACTTCATATCCTTTTTACCATGCAGTGCGTTCGCATTTTAGAATGCTGAAAAGCA
AAGGCGTAAAAGAAAATATTTTAATGACGGGTGAGATTTAA

Upstream 100 bases:

>100_bases
TTTAGATTGCTTACTACTGTTTTTTTGTTTTTAGTAAATCCTTTATGTCATTCTTAAAAATGCTTTCTTGAAAATGGTTT
TTATGTAATGATTTGAAATC

Downstream 100 bases:

>100_bases
GGTTCGAATCCCTCCATGGTCACAACATAAAAAAGCGATTTCATTTGAAACCGCTTTTTTTATATTTTAATATTCTAAGT
TTTATTTACCTCTTTGAAAC

Product: fatty acid desaturase

Products: NA

Alternate protein names: Delta(6)-desaturase [H]

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MCFNFFLLNLIVQFLAIPIMEKLKRPVYLKAGSDDFFKKMRTEVNETVLQNSSLYHFNVIKSLGLLVLFFLFYSCILFFG
SNTSLLFLFYILCGFTMIVLFINAFHDAAHGALFKKTKHNEWFLYVLELFGSNHWLWMRRHINLHHAYPNVPDWDIDIKQ
SDIIRIFPNSPLFEYHKYQHIYMWFIYPLYSLNWIYIRDFKDFFGTKNNYVKKVVEVIPRKQIFILFAAKIINLFYILFI
PMLVLNQPWYLVLAGWFAMHLFGSVLGVVALVSTHVDEDAHFPVTDEDGNLSATWAVHQMIVTKDFSTNSKLANFLYGGF
THHVAHHLFPGVGHTYYPYITPIIMRYAKEYDLPYTSYPFYHAVRSHFRMLKSKGVKENILMTGEI

Sequences:

>Translated_386_residues
MCFNFFLLNLIVQFLAIPIMEKLKRPVYLKAGSDDFFKKMRTEVNETVLQNSSLYHFNVIKSLGLLVLFFLFYSCILFFG
SNTSLLFLFYILCGFTMIVLFINAFHDAAHGALFKKTKHNEWFLYVLELFGSNHWLWMRRHINLHHAYPNVPDWDIDIKQ
SDIIRIFPNSPLFEYHKYQHIYMWFIYPLYSLNWIYIRDFKDFFGTKNNYVKKVVEVIPRKQIFILFAAKIINLFYILFI
PMLVLNQPWYLVLAGWFAMHLFGSVLGVVALVSTHVDEDAHFPVTDEDGNLSATWAVHQMIVTKDFSTNSKLANFLYGGF
THHVAHHLFPGVGHTYYPYITPIIMRYAKEYDLPYTSYPFYHAVRSHFRMLKSKGVKENILMTGEI
>Mature_386_residues
MCFNFFLLNLIVQFLAIPIMEKLKRPVYLKAGSDDFFKKMRTEVNETVLQNSSLYHFNVIKSLGLLVLFFLFYSCILFFG
SNTSLLFLFYILCGFTMIVLFINAFHDAAHGALFKKTKHNEWFLYVLELFGSNHWLWMRRHINLHHAYPNVPDWDIDIKQ
SDIIRIFPNSPLFEYHKYQHIYMWFIYPLYSLNWIYIRDFKDFFGTKNNYVKKVVEVIPRKQIFILFAAKIINLFYILFI
PMLVLNQPWYLVLAGWFAMHLFGSVLGVVALVSTHVDEDAHFPVTDEDGNLSATWAVHQMIVTKDFSTNSKLANFLYGGF
THHVAHHLFPGVGHTYYPYITPIIMRYAKEYDLPYTSYPFYHAVRSHFRMLKSKGVKENILMTGEI

Specific function: Unknown

COG id: COG3239

COG function: function code I; Fatty acid desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005804 [H]

Pfam domain/function: PF00487 FA_desaturase [H]

EC number: =1.14.19.3 [H]

Molecular weight: Translated: 45616; Mature: 45616

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFNFFLLNLIVQFLAIPIMEKLKRPVYLKAGSDDFFKKMRTEVNETVLQNSSLYHFNVI
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEHHHH
KSLGLLVLFFLFYSCILFFGSNTSLLFLFYILCGFTMIVLFINAFHDAAHGALFKKTKHN
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
EWFLYVLELFGSNHWLWMRRHINLHHAYPNVPDWDIDIKQSDIIRIFPNSPLFEYHKYQH
CHHEEHHHHHCCCCEEEEEEECEEEECCCCCCCCCCEECCCCEEEECCCCCCHHHHHHHH
IYMWFIYPLYSLNWIYIRDFKDFFGTKNNYVKKVVEVIPRKQIFILFAAKIINLFYILFI
HHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
PMLVLNQPWYLVLAGWFAMHLFGSVLGVVALVSTHVDEDAHFPVTDEDGNLSATWAVHQM
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHH
IVTKDFSTNSKLANFLYGGFTHHVAHHLFPGVGHTYYPYITPIIMRYAKEYDLPYTSYPF
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
YHAVRSHFRMLKSKGVKENILMTGEI
HHHHHHHHHHHHHCCCCCCCEEECCC
>Mature Secondary Structure
MCFNFFLLNLIVQFLAIPIMEKLKRPVYLKAGSDDFFKKMRTEVNETVLQNSSLYHFNVI
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCEEHHHH
KSLGLLVLFFLFYSCILFFGSNTSLLFLFYILCGFTMIVLFINAFHDAAHGALFKKTKHN
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
EWFLYVLELFGSNHWLWMRRHINLHHAYPNVPDWDIDIKQSDIIRIFPNSPLFEYHKYQH
CHHEEHHHHHCCCCEEEEEEECEEEECCCCCCCCCCEECCCCEEEECCCCCCHHHHHHHH
IYMWFIYPLYSLNWIYIRDFKDFFGTKNNYVKKVVEVIPRKQIFILFAAKIINLFYILFI
HHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
PMLVLNQPWYLVLAGWFAMHLFGSVLGVVALVSTHVDEDAHFPVTDEDGNLSATWAVHQM
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHH
IVTKDFSTNSKLANFLYGGFTHHVAHHLFPGVGHTYYPYITPIIMRYAKEYDLPYTSYPF
HHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHH
YHAVRSHFRMLKSKGVKENILMTGEI
HHHHHHHHHHHHHCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8389613; 8905231 [H]