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The map label for this gene is ddpX [H]

Identifier: 146302328

GI number: 146302328

Start: 5564132

End: 5564809

Strand: Reverse

Name: ddpX [H]

Synonym: Fjoh_4601

Alternate gene names: 146302328

Gene position: 5564809-5564132 (Counterclockwise)

Preceding gene: 146302331

Following gene: 146302319

Centisome position: 91.27

GC content: 31.27

Gene sequence:

>678_bases
ATGATAGACGTAAATTATAACTATATGTTACATTTTTTTAGAATATTATCTTTTTCTTTTTTGATTTTTGGGGCAGTGTC
TGCCCATGCACAGCATGAAGCTTATACAGAACCTGTACAACAACAGATTGCCGATACCACTTTTGTAAATCTAAAAGATT
ATAGCAAAGATTTTGTGTATGATATGAAATATGCAACAGAAGATAATTTCTTAAAAGCCAAAGTATATGACTGTGCTGAA
TGTTTACTGCGTTTAAAAACAGTAAAAGCATTGGTTGCCGCGAACAAAGATTTTATTAAAAAAGGCTATAAAATAAAGCT
TTACGATTGTTATCGTCCTTTGTCGATTCAGAAAAAAATGTGGGAAATTGTATCAAATCCAAAATATGTGGCCGATCCAA
AAAAAGGCTCCATCCACAATAGAGGAGGAGCCGTTGATATTTCGCTGGTTGATATGAACGGGAAAGAATTGGATATGGGA
ACTGCTTTTGATTTTTTTGGACCAGAAGCCGCTCATAATTATACCAATTTTTCTAAAAAAGTTTTATCAAACCGAAAATT
CTTAAAAAAGATAATGATAGAAAATGGTTTCAATTCATTTGATTCAGAATGGTGGCATTATAATTTAAAAGCAGGTTTAA
AAGATAATGTTTCGAATCAAAAATGGAATTGCAATTAA

Upstream 100 bases:

>100_bases
ATGAAAAATAAACTCAGAAATAATAATGTTACTTTATGAATCATAATTACTAAGTTTTTGGGTTAAACGAATTTAATTAT
TATTTCTATATTTACTTTTT

Downstream 100 bases:

>100_bases
ATTATTCTACGCATCTAATATTTTCTATAAAGTAAGTATTGGGGTGCGTTACTTTACCGGTTAATTCAGATGTAAGATCG
GCTTTTACGATATAATCTTC

Product: peptidase M15D, vanX D-ala-D-ala dipeptidase

Products: NA

Alternate protein names: D-Ala-D-Ala dipeptidase [H]

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MIDVNYNYMLHFFRILSFSFLIFGAVSAHAQHEAYTEPVQQQIADTTFVNLKDYSKDFVYDMKYATEDNFLKAKVYDCAE
CLLRLKTVKALVAANKDFIKKGYKIKLYDCYRPLSIQKKMWEIVSNPKYVADPKKGSIHNRGGAVDISLVDMNGKELDMG
TAFDFFGPEAAHNYTNFSKKVLSNRKFLKKIMIENGFNSFDSEWWHYNLKAGLKDNVSNQKWNCN

Sequences:

>Translated_225_residues
MIDVNYNYMLHFFRILSFSFLIFGAVSAHAQHEAYTEPVQQQIADTTFVNLKDYSKDFVYDMKYATEDNFLKAKVYDCAE
CLLRLKTVKALVAANKDFIKKGYKIKLYDCYRPLSIQKKMWEIVSNPKYVADPKKGSIHNRGGAVDISLVDMNGKELDMG
TAFDFFGPEAAHNYTNFSKKVLSNRKFLKKIMIENGFNSFDSEWWHYNLKAGLKDNVSNQKWNCN
>Mature_225_residues
MIDVNYNYMLHFFRILSFSFLIFGAVSAHAQHEAYTEPVQQQIADTTFVNLKDYSKDFVYDMKYATEDNFLKAKVYDCAE
CLLRLKTVKALVAANKDFIKKGYKIKLYDCYRPLSIQKKMWEIVSNPKYVADPKKGSIHNRGGAVDISLVDMNGKELDMG
TAFDFFGPEAAHNYTNFSKKVLSNRKFLKKIMIENGFNSFDSEWWHYNLKAGLKDNVSNQKWNCN

Specific function: Hydrolyzes D-Ala-D-Ala. May have a role in cell-wall turnover [H]

COG id: COG2173

COG function: function code M; D-alanyl-D-alanine dipeptidase

Gene ontology:

Cell location: Secreted (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15D family [H]

Homologues:

Organism=Escherichia coli, GI1787763, Length=184, Percent_Identity=34.2391304347826, Blast_Score=117, Evalue=7e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR000755 [H]

Pfam domain/function: PF01427 Peptidase_M15 [H]

EC number: =3.4.13.22 [H]

Molecular weight: Translated: 26106; Mature: 26106

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDVNYNYMLHFFRILSFSFLIFGAVSAHAQHEAYTEPVQQQIADTTFVNLKDYSKDFVY
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCHHEE
DMKYATEDNFLKAKVYDCAECLLRLKTVKALVAANKDFIKKGYKIKLYDCYRPLSIQKKM
EEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEECCCCHHHHHHH
WEIVSNPKYVADPKKGSIHNRGGAVDISLVDMNGKELDMGTAFDFFGPEAAHNYTNFSKK
HHHHCCCCEEECCCCCCCCCCCCEEEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHH
VLSNRKFLKKIMIENGFNSFDSEWWHYNLKAGLKDNVSNQKWNCN
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIDVNYNYMLHFFRILSFSFLIFGAVSAHAQHEAYTEPVQQQIADTTFVNLKDYSKDFVY
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCHHEE
DMKYATEDNFLKAKVYDCAECLLRLKTVKALVAANKDFIKKGYKIKLYDCYRPLSIQKKM
EEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEEEEECCCCHHHHHHH
WEIVSNPKYVADPKKGSIHNRGGAVDISLVDMNGKELDMGTAFDFFGPEAAHNYTNFSKK
HHHHCCCCEEECCCCCCCCCCCCEEEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHH
VLSNRKFLKKIMIENGFNSFDSEWWHYNLKAGLKDNVSNQKWNCN
HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]