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The map label for this gene is araC [C]

Identifier: 146302170

GI number: 146302170

Start: 5360549

End: 5361316

Strand: Direct

Name: araC [C]

Synonym: Fjoh_4438

Alternate gene names: 146302170

Gene position: 5360549-5361316 (Clockwise)

Preceding gene: 146302169

Following gene: 146302171

Centisome position: 87.92

GC content: 32.81

Gene sequence:

>768_bases
ATGCAGTATCACTATGAAATAAATACTCCTGAAAAAGACGAATTGTTGCCATATATCCATCAATACATTCATTTTTCTTC
TTCAAGTAAAAAATTATTGCAGAAAAATCTATGGCCAAGTGCTAATGCTTCATTGATTTTTAATTTCAAAAAGACAAAAT
TAAACGACAAATTAAGCCCAGTTGTCGCTATAGCAGGATTACATGACGTTATTCATGTAATACAACCCGAGGAAAATGAT
ATTGATACAATTATAGTTCATTGCTCTCCTGCTCTTTTGACTGTTTTTAGTACTACGCAAACTTCTTTTATAACCAATAC
TATTATTGATGCAAAAGATATATTTGGAGAGACTATTGCTTCCCTTTCCACATCACTTCAATTGGTAAAAAATATCAAAG
CAAGACAAAATTTACTGGACACTTTTTTTATCGGTCTATTAACCAAAACTACTGAACAGACTTCCTGTTTTGCAAAACTT
GCAAAAGCTATTCAATCTAATCCTGAATATAAAATAACTTTAGGAACCGAGATAAGCTATCGCCATTTATCACGAATGTT
TAAGCAGATTATAGGGGTCAATATTCAAACTTACAGACGACTGGCCCGATTTGAATTAGCCAAACAGTTGATAATCCAAG
AAACAACTATTTCATTGACAGGTGTTGGATATCAATCCGGTTATTACGATCAGGCCCATTTTGCAAAAGAATTCAAAAAA
TTATCCGGTTTAAGAGCCAAATATTTTGGTCCGCTCTGCTCCATTTAA

Upstream 100 bases:

>100_bases
TTTGTTAAAAGTTTTTTTCTGGAAATCCAACTTCTTAAAACCTTACCTTAGATATAATTACTAGTTGTCCATAAATCTTG
TAAAAGAATCAGAAAACACC

Downstream 100 bases:

>100_bases
TTTCCTAATTATTTCCTGTATGTCCATTGTGTACAATTTTATGCCAATCCTATAGTATAGTTTTGCTCAAAAATATTCAA
CAATGGAAACAATTATTTAT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Helix-Turn-Helix Domain-Containing Protein; Regulatory Protein

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MQYHYEINTPEKDELLPYIHQYIHFSSSSKKLLQKNLWPSANASLIFNFKKTKLNDKLSPVVAIAGLHDVIHVIQPEEND
IDTIIVHCSPALLTVFSTTQTSFITNTIIDAKDIFGETIASLSTSLQLVKNIKARQNLLDTFFIGLLTKTTEQTSCFAKL
AKAIQSNPEYKITLGTEISYRHLSRMFKQIIGVNIQTYRRLARFELAKQLIIQETTISLTGVGYQSGYYDQAHFAKEFKK
LSGLRAKYFGPLCSI

Sequences:

>Translated_255_residues
MQYHYEINTPEKDELLPYIHQYIHFSSSSKKLLQKNLWPSANASLIFNFKKTKLNDKLSPVVAIAGLHDVIHVIQPEEND
IDTIIVHCSPALLTVFSTTQTSFITNTIIDAKDIFGETIASLSTSLQLVKNIKARQNLLDTFFIGLLTKTTEQTSCFAKL
AKAIQSNPEYKITLGTEISYRHLSRMFKQIIGVNIQTYRRLARFELAKQLIIQETTISLTGVGYQSGYYDQAHFAKEFKK
LSGLRAKYFGPLCSI
>Mature_255_residues
MQYHYEINTPEKDELLPYIHQYIHFSSSSKKLLQKNLWPSANASLIFNFKKTKLNDKLSPVVAIAGLHDVIHVIQPEEND
IDTIIVHCSPALLTVFSTTQTSFITNTIIDAKDIFGETIASLSTSLQLVKNIKARQNLLDTFFIGLLTKTTEQTSCFAKL
AKAIQSNPEYKITLGTEISYRHLSRMFKQIIGVNIQTYRRLARFELAKQLIIQETTISLTGVGYQSGYYDQAHFAKEFKK
LSGLRAKYFGPLCSI

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28930; Mature: 28930

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYHYEINTPEKDELLPYIHQYIHFSSSSKKLLQKNLWPSANASLIFNFKKTKLNDKLSP
CCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEEHHHCCCCHHHH
VVAIAGLHDVIHVIQPEENDIDTIIVHCSPALLTVFSTTQTSFITNTIIDAKDIFGETIA
HHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLSTSLQLVKNIKARQNLLDTFFIGLLTKTTEQTSCFAKLAKAIQSNPEYKITLGTEISY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
RHLSRMFKQIIGVNIQTYRRLARFELAKQLIIQETTISLTGVGYQSGYYDQAHFAKEFKK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHH
LSGLRAKYFGPLCSI
HHCCHHHHCCCCCCC
>Mature Secondary Structure
MQYHYEINTPEKDELLPYIHQYIHFSSSSKKLLQKNLWPSANASLIFNFKKTKLNDKLSP
CCEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEEEHHHCCCCHHHH
VVAIAGLHDVIHVIQPEENDIDTIIVHCSPALLTVFSTTQTSFITNTIIDAKDIFGETIA
HHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLSTSLQLVKNIKARQNLLDTFFIGLLTKTTEQTSCFAKLAKAIQSNPEYKITLGTEISY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCH
RHLSRMFKQIIGVNIQTYRRLARFELAKQLIIQETTISLTGVGYQSGYYDQAHFAKEFKK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHHH
LSGLRAKYFGPLCSI
HHCCHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA