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The map label for this gene is hspC2 [H]

Identifier: 146302147

GI number: 146302147

Start: 5325873

End: 5326325

Strand: Reverse

Name: hspC2 [H]

Synonym: Fjoh_4413

Alternate gene names: 146302147

Gene position: 5326325-5325873 (Counterclockwise)

Preceding gene: 146302148

Following gene: 146302146

Centisome position: 87.36

GC content: 40.18

Gene sequence:

>453_bases
ATGAATCTTATTAAAAGAAACGGAAGCCATGTGCCGGCTTTCCAACGCTTGTTTTTTGATGATGTTTTTGGCCGCGATCT
TTTCAATTGGGAAAACAACAATTTTTCAACCACAAGCACCACACTGCCTTCAGTGAATATTAAGGAAACTGATGAGAATT
ATGAAGTGGAGGTTGCCGCTCCCGGTATGAGCAAGGATGACTTCAAGGTTACCCTTGATAATGGACAGCTGCTTATTTCT
TCGTCTAAACAGGAACATGTAAATAAAGAGGAAGAAAATTACACCCGCAGAGAGTTCAGCTACCAGTCTTTCCAGAGAAG
TTTTATACTGCCTAAAAATGTAGTGGACGAAGATAGAATTCGTGCCCGTTACGAAAATGGAATTTTACTGCTGTCGATTC
CAAAACTGGAACAGGCCAGACAAAAATCACCAAGGATGATAGAGATTTCTTAA

Upstream 100 bases:

>100_bases
TGTCAGAATTATCCCCTGGCATATTATTTGTTTTTTTCCTTGTGCGCACCTTTGTGCAAGTTCAAAAATTTATTGTATAA
CAATTTTAAAAATTACTGTT

Downstream 100 bases:

>100_bases
AAACTTTTATCAATTTTTTTATTGAAAGCTGCCCTATAAAGGCAGCTTTCTTGATAATAATTTAAAAATATGCTCTCACA
ATTATTCTCGGGGATCGCTG

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 150

Protein sequence:

>150_residues
MNLIKRNGSHVPAFQRLFFDDVFGRDLFNWENNNFSTTSTTLPSVNIKETDENYEVEVAAPGMSKDDFKVTLDNGQLLIS
SSKQEHVNKEEENYTRREFSYQSFQRSFILPKNVVDEDRIRARYENGILLLSIPKLEQARQKSPRMIEIS

Sequences:

>Translated_150_residues
MNLIKRNGSHVPAFQRLFFDDVFGRDLFNWENNNFSTTSTTLPSVNIKETDENYEVEVAAPGMSKDDFKVTLDNGQLLIS
SSKQEHVNKEEENYTRREFSYQSFQRSFILPKNVVDEDRIRARYENGILLLSIPKLEQARQKSPRMIEIS
>Mature_150_residues
MNLIKRNGSHVPAFQRLFFDDVFGRDLFNWENNNFSTTSTTLPSVNIKETDENYEVEVAAPGMSKDDFKVTLDNGQLLIS
SSKQEHVNKEEENYTRREFSYQSFQRSFILPKNVVDEDRIRARYENGILLLSIPKLEQARQKSPRMIEIS

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 17511; Mature: 17511

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLIKRNGSHVPAFQRLFFDDVFGRDLFNWENNNFSTTSTTLPSVNIKETDENYEVEVAA
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCEEEECCCCEEEEEEC
PGMSKDDFKVTLDNGQLLISSSKQEHVNKEEENYTRREFSYQSFQRSFILPKNVVDEDRI
CCCCCCCEEEEECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
RARYENGILLLSIPKLEQARQKSPRMIEIS
HHHHCCCEEEEECCCHHHHHHCCCCEEEEC
>Mature Secondary Structure
MNLIKRNGSHVPAFQRLFFDDVFGRDLFNWENNNFSTTSTTLPSVNIKETDENYEVEVAA
CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCEEEECCCCEEEEEEC
PGMSKDDFKVTLDNGQLLISSSKQEHVNKEEENYTRREFSYQSFQRSFILPKNVVDEDRI
CCCCCCCEEEEECCCEEEEECCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
RARYENGILLLSIPKLEQARQKSPRMIEIS
HHHHCCCEEEEECCCHHHHHHCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA