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The map label for this gene is bepD [H]

Identifier: 146302141

GI number: 146302141

Start: 5315575

End: 5316657

Strand: Direct

Name: bepD [H]

Synonym: Fjoh_4407

Alternate gene names: 146302141

Gene position: 5315575-5316657 (Clockwise)

Preceding gene: 146302140

Following gene: 146302142

Centisome position: 87.19

GC content: 37.67

Gene sequence:

>1083_bases
ATGAAAAGAATTTTCATGCTCATGTCTTTATGTGCATTAGTTTTTGCAGGCTGCAACTCTAAAAAAGAAGGAGAAAAAGA
GGAAAAAACCAAATTTCTGGTTACTGCTCCAATTCAAAAAGATACTATCATTACAAAAGATTACGTATCGCAGATACATT
CCATACAGCATATTGAAATAAGGGCCCAAGAACGCGGCTATTTAGAAAAAATCTATGTCGATGAAGGACAGATGGTCAAA
AAGGGACAGCTATTATTTAAAATTATGCCGGCACTCTACGAAGCGGAACTAAAAAAATCCAAAGCAGAGGTAAGTTTCAC
CTCCATTGAATACCAAAATGCAAAAAAACTGGCGGATGAAAAAGTAGTTTCTCCAAACGAACTTGCTATGGCCAAAGCGA
AGCTGGAAAAAGCAGATGCTGAAATGGCTTTAAGCAGAGTCCATCTTCAGTTTACTGAAATCAGGGCACCTTTTGACGGC
ATAATAGACAAGTTTCACGTGCGCCAGGGAAGTCTGGTTGATGAAGGCGAACTGCTTACAGAACTGGCAGACAACAGCTC
TATGTGGGTGTATTACAATGTTCCGGAATCTGAATATTTGGATTATCAGGAACAAACAGATAAAAGAGGCAAAATGAAAG
TCAATCTGCTAATGGCCAATAACAAAAAATTCCAATACCCTGGAGTTGTAGAAACTATTGAAGCCGATTTTGACAATGAA
ACAGGAAATATTCCTTTTAGAGCCACTTTTCCAAATCCAAAAAGATTATTGAGACACGGAGAAACAGGAAGCATCCAGAT
GCCGATAGAACTGAAAAATGCTATGCTTATCCCTCAGAAAGCCACATTTGAAGTTTTGGACAAGAAATATGTATATGTAA
TTGACAAAAACAATGCCGTAAAATCCAGAGAGGTTGTTATTGCCGCGGAAATGCCTCACCTATTTGTAATAAAACAAGGT
TTGTCAATTCACGATAAAATTCTTTTAGAGGGGCTTCGTCTTGTAAAAGAAAATCAGAAAATAGACTACGAAGTGGTAAA
ACCCCAGTCGGTTATCTCCAATTTAGAACTCTATGCAGAATAA

Upstream 100 bases:

>100_bases
GATTATTTCTCTAAGCCGGCAAACGGATGCGGAATACTTCAGCCTTATTTAAGGCTGTTAAAAAAATCAAAAATCATTAC
GTTTTAATTCTGAAATTATT

Downstream 100 bases:

>100_bases
CCGAATCTAAAAGAAAAAGAAATGTTTAATAAATTTATACATAGACCCGTTTTTGCAATTATAATTTCGATTATAATTGT
CTTTATAGGCACGCTGTCCA

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MKRIFMLMSLCALVFAGCNSKKEGEKEEKTKFLVTAPIQKDTIITKDYVSQIHSIQHIEIRAQERGYLEKIYVDEGQMVK
KGQLLFKIMPALYEAELKKSKAEVSFTSIEYQNAKKLADEKVVSPNELAMAKAKLEKADAEMALSRVHLQFTEIRAPFDG
IIDKFHVRQGSLVDEGELLTELADNSSMWVYYNVPESEYLDYQEQTDKRGKMKVNLLMANNKKFQYPGVVETIEADFDNE
TGNIPFRATFPNPKRLLRHGETGSIQMPIELKNAMLIPQKATFEVLDKKYVYVIDKNNAVKSREVVIAAEMPHLFVIKQG
LSIHDKILLEGLRLVKENQKIDYEVVKPQSVISNLELYAE

Sequences:

>Translated_360_residues
MKRIFMLMSLCALVFAGCNSKKEGEKEEKTKFLVTAPIQKDTIITKDYVSQIHSIQHIEIRAQERGYLEKIYVDEGQMVK
KGQLLFKIMPALYEAELKKSKAEVSFTSIEYQNAKKLADEKVVSPNELAMAKAKLEKADAEMALSRVHLQFTEIRAPFDG
IIDKFHVRQGSLVDEGELLTELADNSSMWVYYNVPESEYLDYQEQTDKRGKMKVNLLMANNKKFQYPGVVETIEADFDNE
TGNIPFRATFPNPKRLLRHGETGSIQMPIELKNAMLIPQKATFEVLDKKYVYVIDKNNAVKSREVVIAAEMPHLFVIKQG
LSIHDKILLEGLRLVKENQKIDYEVVKPQSVISNLELYAE
>Mature_360_residues
MKRIFMLMSLCALVFAGCNSKKEGEKEEKTKFLVTAPIQKDTIITKDYVSQIHSIQHIEIRAQERGYLEKIYVDEGQMVK
KGQLLFKIMPALYEAELKKSKAEVSFTSIEYQNAKKLADEKVVSPNELAMAKAKLEKADAEMALSRVHLQFTEIRAPFDG
IIDKFHVRQGSLVDEGELLTELADNSSMWVYYNVPESEYLDYQEQTDKRGKMKVNLLMANNKKFQYPGVVETIEADFDNE
TGNIPFRATFPNPKRLLRHGETGSIQMPIELKNAMLIPQKATFEVLDKKYVYVIDKNNAVKSREVVIAAEMPHLFVIKQG
LSIHDKILLEGLRLVKENQKIDYEVVKPQSVISNLELYAE

Specific function: Involved in resistance to several unrelated toxic compounds, such as dyes, detergents and antibiotics [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI1789665, Length=386, Percent_Identity=27.2020725388601, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1786668, Length=364, Percent_Identity=26.6483516483516, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1789929, Length=366, Percent_Identity=22.1311475409836, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI87082036, Length=342, Percent_Identity=25.1461988304094, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI87081796, Length=316, Percent_Identity=25.3164556962025, Blast_Score=76, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 41217; Mature: 41217

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIFMLMSLCALVFAGCNSKKEGEKEEKTKFLVTAPIQKDTIITKDYVSQIHSIQHIEI
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHCEEEEECCCCCCCEECHHHHHHHHCEEEEEE
RAQERGYLEKIYVDEGQMVKKGQLLFKIMPALYEAELKKSKAEVSFTSIEYQNAKKLADE
EECCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHH
KVVSPNELAMAKAKLEKADAEMALSRVHLQFTEIRAPFDGIIDKFHVRQGSLVDEGELLT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCHHHHHHHHHCCCCCCCCCHHHHH
ELADNSSMWVYYNVPESEYLDYQEQTDKRGKMKVNLLMANNKKFQYPGVVETIEADFDNE
HHCCCCCEEEEEECCCHHHCCCHHHCCCCCCEEEEEEEECCCCEECCCHHEEEECCCCCC
TGNIPFRATFPNPKRLLRHGETGSIQMPIELKNAMLIPQKATFEVLDKKYVYVIDKNNAV
CCCCCEEEECCCHHHHHHCCCCCCEEEEEEECCEEECCCCCHHHHHCCEEEEEEECCCCC
KSREVVIAAEMPHLFVIKQGLSIHDKILLEGLRLVKENQKIDYEVVKPQSVISNLELYAE
CCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHCCHHEECC
>Mature Secondary Structure
MKRIFMLMSLCALVFAGCNSKKEGEKEEKTKFLVTAPIQKDTIITKDYVSQIHSIQHIEI
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHCEEEEECCCCCCCEECHHHHHHHHCEEEEEE
RAQERGYLEKIYVDEGQMVKKGQLLFKIMPALYEAELKKSKAEVSFTSIEYQNAKKLADE
EECCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHH
KVVSPNELAMAKAKLEKADAEMALSRVHLQFTEIRAPFDGIIDKFHVRQGSLVDEGELLT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEHHCCCHHHHHHHHHCCCCCCCCCHHHHH
ELADNSSMWVYYNVPESEYLDYQEQTDKRGKMKVNLLMANNKKFQYPGVVETIEADFDNE
HHCCCCCEEEEEECCCHHHCCCHHHCCCCCCEEEEEEEECCCCEECCCHHEEEECCCCCC
TGNIPFRATFPNPKRLLRHGETGSIQMPIELKNAMLIPQKATFEVLDKKYVYVIDKNNAV
CCCCCEEEECCCHHHHHHCCCCCCEEEEEEECCEEECCCCCHHHHHCCEEEEEEECCCCC
KSREVVIAAEMPHLFVIKQGLSIHDKILLEGLRLVKENQKIDYEVVKPQSVISNLELYAE
CCCEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12271122 [H]