Click here to switch to the map view.

The map label for this gene is aphA [H]

Identifier: 146302134

GI number: 146302134

Start: 5305523

End: 5306548

Strand: Direct

Name: aphA [H]

Synonym: Fjoh_4399

Alternate gene names: 146302134

Gene position: 5305523-5306548 (Clockwise)

Preceding gene: 146302133

Following gene: 146302135

Centisome position: 87.02

GC content: 33.43

Gene sequence:

>1026_bases
ATGGCATTAGTAGCAATCATTTTTTTAGCAATCATCATAGTGTCAATCATTTTAGGATGGGGGCTGTTTTTTAAAACATA
TAGTAAACTATTAATTGCAGCACTTATTCTTTTATTGTCCTTTTTAGTTCTGCTCTTTTTCACTACAATACATTCAATTG
ATGTTTTGGATAACGCAAAAGATTATAGCAAAATTGGTCCATACGGTGATTATATAGGTGGAATTCTTAATCCACTTATA
GCGGTTTTTGCGGTTTTTGCTGCTGGCTTTGCATTTTATGCCCAATATGAAGCCAATAAACAAGTTCAAGATCAATTTAA
AATTCAACAATTTGAAAGTCAATTTTTCGAGATGCTTCGACTGCATAAAGAAAATGTAAATGAAATGAAAATTACTGGAT
ATGATTCAGTAATTCAAGAAACATTAGATAATGAAAAGAAAGTTGTTCAAATAATTAGGTCCCATAATACAAAAATAATA
GAAGGCAGAAAAGTTTTTGTTTCTATGGTTGTTGAATTAATTTCATGTTATGAATTTTTAGAGGAGATAAATAGCACTTG
GAAAGTTAGATATACCCCTGTAGATTTATTAAAACTATCTTATAGAATATTTTTCTTTGGTTCTAATTCTGAACTTATAA
TATTAGATAAAATTGATGTTGATTTTATTGATCATGTAAAAAAACAATTGCGAAAACATCGCAAAAGACATAGGGACTCA
AAGGCCAATGAGCCGCCCAGAGTGATTATCACTTCGCATATTATAAATCAAGAAGGCATCGAGCTGCTGGAAATAAAAAT
AAGGGACAACGGCATTGGACTGGATCCTGTTTTTGCCGAGAAGATATTTGATGCCTTTGAAAGGCTTCACTCCAAAGACC
AGTATGAAGGCAACGGGCTCGGCCTTGCCCTGTGCAGAAAAATAGCCAAAAGGCATAATGGTGCTATTACAGCTGCGGGG
GAGAAAGACAACGGTGCTGAATTTACAGTTACCCTTCCTTTAAAACAGTCCGATTCTTATCTTTAG

Upstream 100 bases:

>100_bases
CTTCCTCAAAGGGCCATTATGGTAATGGTGATTATGAATTATCTATTTCTGACACCCAAAATTTAGAATACATAATGAGT
TTAATCAAACAGGCTTTATA

Downstream 100 bases:

>100_bases
CACCTTGTAAGGAAATAAATAAGCTGAAAGATTCTTATCGCAAATGTGTTATTGCAAATTGTGAATTTCAATTTCGCAGA
TAATTCAATATATACAATCA

Product: integral membrane sensor signal transduction histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MALVAIIFLAIIIVSIILGWGLFFKTYSKLLIAALILLLSFLVLLFFTTIHSIDVLDNAKDYSKIGPYGDYIGGILNPLI
AVFAVFAAGFAFYAQYEANKQVQDQFKIQQFESQFFEMLRLHKENVNEMKITGYDSVIQETLDNEKKVVQIIRSHNTKII
EGRKVFVSMVVELISCYEFLEEINSTWKVRYTPVDLLKLSYRIFFFGSNSELIILDKIDVDFIDHVKKQLRKHRKRHRDS
KANEPPRVIITSHIINQEGIELLEIKIRDNGIGLDPVFAEKIFDAFERLHSKDQYEGNGLGLALCRKIAKRHNGAITAAG
EKDNGAEFTVTLPLKQSDSYL

Sequences:

>Translated_341_residues
MALVAIIFLAIIIVSIILGWGLFFKTYSKLLIAALILLLSFLVLLFFTTIHSIDVLDNAKDYSKIGPYGDYIGGILNPLI
AVFAVFAAGFAFYAQYEANKQVQDQFKIQQFESQFFEMLRLHKENVNEMKITGYDSVIQETLDNEKKVVQIIRSHNTKII
EGRKVFVSMVVELISCYEFLEEINSTWKVRYTPVDLLKLSYRIFFFGSNSELIILDKIDVDFIDHVKKQLRKHRKRHRDS
KANEPPRVIITSHIINQEGIELLEIKIRDNGIGLDPVFAEKIFDAFERLHSKDQYEGNGLGLALCRKIAKRHNGAITAAG
EKDNGAEFTVTLPLKQSDSYL
>Mature_340_residues
ALVAIIFLAIIIVSIILGWGLFFKTYSKLLIAALILLLSFLVLLFFTTIHSIDVLDNAKDYSKIGPYGDYIGGILNPLIA
VFAVFAAGFAFYAQYEANKQVQDQFKIQQFESQFFEMLRLHKENVNEMKITGYDSVIQETLDNEKKVVQIIRSHNTKIIE
GRKVFVSMVVELISCYEFLEEINSTWKVRYTPVDLLKLSYRIFFFGSNSELIILDKIDVDFIDHVKKQLRKHRKRHRDSK
ANEPPRVIITSHIINQEGIELLEIKIRDNGIGLDPVFAEKIFDAFERLHSKDQYEGNGLGLALCRKIAKRHNGAITAAGE
KDNGAEFTVTLPLKQSDSYL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1786912, Length=84, Percent_Identity=45.2380952380952, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 38988; Mature: 38857

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALVAIIFLAIIIVSIILGWGLFFKTYSKLLIAALILLLSFLVLLFFTTIHSIDVLDNAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DYSKIGPYGDYIGGILNPLIAVFAVFAAGFAFYAQYEANKQVQDQFKIQQFESQFFEMLR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LHKENVNEMKITGYDSVIQETLDNEKKVVQIIRSHNTKIIEGRKVFVSMVVELISCYEFL
HHHCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHH
EEINSTWKVRYTPVDLLKLSYRIFFFGSNSELIILDKIDVDFIDHVKKQLRKHRKRHRDS
HHHCCCEEEEECHHHHHHEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
KANEPPRVIITSHIINQEGIELLEIKIRDNGIGLDPVFAEKIFDAFERLHSKDQYEGNGL
CCCCCCEEEEEEHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH
GLALCRKIAKRHNGAITAAGEKDNGAEFTVTLPLKQSDSYL
HHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
ALVAIIFLAIIIVSIILGWGLFFKTYSKLLIAALILLLSFLVLLFFTTIHSIDVLDNAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DYSKIGPYGDYIGGILNPLIAVFAVFAAGFAFYAQYEANKQVQDQFKIQQFESQFFEMLR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
LHKENVNEMKITGYDSVIQETLDNEKKVVQIIRSHNTKIIEGRKVFVSMVVELISCYEFL
HHHCCCCCEEECCHHHHHHHHHCCHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHH
EEINSTWKVRYTPVDLLKLSYRIFFFGSNSELIILDKIDVDFIDHVKKQLRKHRKRHRDS
HHHCCCEEEEECHHHHHHEEEEEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCC
KANEPPRVIITSHIINQEGIELLEIKIRDNGIGLDPVFAEKIFDAFERLHSKDQYEGNGL
CCCCCCEEEEEEHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCH
GLALCRKIAKRHNGAITAAGEKDNGAEFTVTLPLKQSDSYL
HHHHHHHHHHHCCCCEEECCCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]