| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is exuT [H]
Identifier: 146302001
GI number: 146302001
Start: 5151468
End: 5152937
Strand: Reverse
Name: exuT [H]
Synonym: Fjoh_4265
Alternate gene names: 146302001
Gene position: 5152937-5151468 (Counterclockwise)
Preceding gene: 146302003
Following gene: 146302000
Centisome position: 84.52
GC content: 35.99
Gene sequence:
>1470_bases ATGAGTCAAACCGATGCTGTTACAGTAAATCAAACCGTTAAGTCCGCAGGAAGATATCGTTGGAGTATATGTGCTCTGCT TTTTTTTGCAACCACTATTAATTATCTCGACAGACAAGTTTTGTCTTTAACTTGGAGTGATTTTATTGCACCGGAATTTC ATTGGACAAATAACGATTATGGAAATATCACGGCTTTATTTTCTATTTTTTATGCCGTTTCTTTATTATTCGCAGGAAGA TTTATAGACTGGATGGATACTAAAAAAGGATTTCTGTGGGCAATTGGAATTTGGTCTATAGGAGCTTGTTTACATGCATT TTGCGGTATCGCTACTTCTGGAATTATTACAGGAAACTGGCTGGTAGGATTTCATGGATCAAAAGAAATTATAAGTACAA TAAACGACACGGGACTTGTAATTAATGTAAGTGTAGCTTTGTTTATTTTTGCTCGTTTTGTTTTGGCAGTAGGAGAAGCT GGAAACTTTCCTGCAGCAATTAAAACTACAGCAGAATATTTTCCTAAAAAAGACAGAGCATTTTCTACAAGTATATTTAA CGCTGGTGCCACAGTTGGTGCATTGGCAGCTCCAATTACAATTCCGTTTATTGCTAAATCATTTGGATGGGAAATGTCTT TCATCATTATTGGAGCATTAGGTTTTATATGGATGGGATTCTGGGTTTTCATGTACGATAAACCAGAAAGACACCCAAGA GTAAGTCCTGAAGAATTAGCTTATATTCAGCAGGATGATATTGCAGACAGCAAATTAGAAGGTTATGTTCCGGAAACAAC TTCAAAAGTTTCATTTGTAGACTGTTTTAAATACAAACAAACCTGGGCTTTTGCTTTTGGTAAATTTATGACAGATGGTG TTTGGTGGTTTTTCTTATTCTGGACTCCGGCTTATTTAAGCTCAGTTTACGGAATGGATTCTACAGAAGCAGCTTTACCA TTATTTGTTTTATACATGATTACATTATTATCAATTATTGGCGGCTGGCTTCCAACTTATTTTGTAGAAAAGAAAGGAAT GAACCCATACGAAGGAAGAATGCGAGCGATGTTAATTTTTGCTTTCTTCCCATTGCTGGCCTTAATTGCACAACCGTTAG GATATATCAGTTACTGGGTTCCGGTAATCATCATCGGAATTGCAGGAGCGGCACACCAGTCTTGGTCGGCAAATATTTTT ACAACAGTAGGAGATATGTTCCCTAAAAAAGCTATTGCAACAATTACAGGAATTGGTGGTTTAGCAGGAGGAGTAGGATC TACTTTAATCAATAAAGGCTCTGGAGTTTTGTTTGATTATGCTAAAGAAACTGAAATGGTTTTTATGGGATTCAAAGGAA TAGAGGCAGGATATTTTATCATTTTCTCTATTTGTGCTGTATGTTATTTAACAGGATGGATTGTAATGAAATCTTTAGTT CCTAGATACAGTCCGATCACAAATTTGTAA
Upstream 100 bases:
>100_bases GTTTTATAAAATTAAAATATTGATTTTAATGTGTTTAAATTATGCGTAGTGTGTATAAGATTTTTCCAAAAAAAATATCT AACTATAATAACCCGTTACC
Downstream 100 bases:
>100_bases TGGATAATTTTTCTAAATAGAATAATTTTTTCATTTGAATTATGGTTTTTCAATATAAAAAATTAATTTTGTGCAATCGA TTACATTAAACAAAAATTAT
Product: major facilitator transporter
Products: galacturonate [Cytoplasm]; Proton [Cytoplasm]; glucuronate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 489; Mature: 488
Protein sequence:
>489_residues MSQTDAVTVNQTVKSAGRYRWSICALLFFATTINYLDRQVLSLTWSDFIAPEFHWTNNDYGNITALFSIFYAVSLLFAGR FIDWMDTKKGFLWAIGIWSIGACLHAFCGIATSGIITGNWLVGFHGSKEIISTINDTGLVINVSVALFIFARFVLAVGEA GNFPAAIKTTAEYFPKKDRAFSTSIFNAGATVGALAAPITIPFIAKSFGWEMSFIIIGALGFIWMGFWVFMYDKPERHPR VSPEELAYIQQDDIADSKLEGYVPETTSKVSFVDCFKYKQTWAFAFGKFMTDGVWWFFLFWTPAYLSSVYGMDSTEAALP LFVLYMITLLSIIGGWLPTYFVEKKGMNPYEGRMRAMLIFAFFPLLALIAQPLGYISYWVPVIIIGIAGAAHQSWSANIF TTVGDMFPKKAIATITGIGGLAGGVGSTLINKGSGVLFDYAKETEMVFMGFKGIEAGYFIIFSICAVCYLTGWIVMKSLV PRYSPITNL
Sequences:
>Translated_489_residues MSQTDAVTVNQTVKSAGRYRWSICALLFFATTINYLDRQVLSLTWSDFIAPEFHWTNNDYGNITALFSIFYAVSLLFAGR FIDWMDTKKGFLWAIGIWSIGACLHAFCGIATSGIITGNWLVGFHGSKEIISTINDTGLVINVSVALFIFARFVLAVGEA GNFPAAIKTTAEYFPKKDRAFSTSIFNAGATVGALAAPITIPFIAKSFGWEMSFIIIGALGFIWMGFWVFMYDKPERHPR VSPEELAYIQQDDIADSKLEGYVPETTSKVSFVDCFKYKQTWAFAFGKFMTDGVWWFFLFWTPAYLSSVYGMDSTEAALP LFVLYMITLLSIIGGWLPTYFVEKKGMNPYEGRMRAMLIFAFFPLLALIAQPLGYISYWVPVIIIGIAGAAHQSWSANIF TTVGDMFPKKAIATITGIGGLAGGVGSTLINKGSGVLFDYAKETEMVFMGFKGIEAGYFIIFSICAVCYLTGWIVMKSLV PRYSPITNL >Mature_488_residues SQTDAVTVNQTVKSAGRYRWSICALLFFATTINYLDRQVLSLTWSDFIAPEFHWTNNDYGNITALFSIFYAVSLLFAGRF IDWMDTKKGFLWAIGIWSIGACLHAFCGIATSGIITGNWLVGFHGSKEIISTINDTGLVINVSVALFIFARFVLAVGEAG NFPAAIKTTAEYFPKKDRAFSTSIFNAGATVGALAAPITIPFIAKSFGWEMSFIIIGALGFIWMGFWVFMYDKPERHPRV SPEELAYIQQDDIADSKLEGYVPETTSKVSFVDCFKYKQTWAFAFGKFMTDGVWWFFLFWTPAYLSSVYGMDSTEAALPL FVLYMITLLSIIGGWLPTYFVEKKGMNPYEGRMRAMLIFAFFPLLALIAQPLGYISYWVPVIIIGIAGAAHQSWSANIFT TVGDMFPKKAIATITGIGGLAGGVGSTLINKGSGVLFDYAKETEMVFMGFKGIEAGYFIIFSICAVCYLTGWIVMKSLVP RYSPITNL
Specific function: Aldohexuronate transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]
Homologues:
Organism=Homo sapiens, GI9945322, Length=321, Percent_Identity=23.0529595015576, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI9966811, Length=294, Percent_Identity=22.108843537415, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI148743791, Length=366, Percent_Identity=22.1311475409836, Blast_Score=68, Evalue=2e-11, Organism=Escherichia coli, GI2367193, Length=425, Percent_Identity=27.2941176470588, Blast_Score=149, Evalue=3e-37, Organism=Escherichia coli, GI1789515, Length=473, Percent_Identity=24.3128964059197, Blast_Score=115, Evalue=7e-27, Organism=Escherichia coli, GI1789152, Length=337, Percent_Identity=27.0029673590504, Blast_Score=102, Evalue=8e-23, Organism=Escherichia coli, GI87082320, Length=338, Percent_Identity=25.4437869822485, Blast_Score=96, Evalue=5e-21, Organism=Escherichia coli, GI2367379, Length=347, Percent_Identity=23.6311239193084, Blast_Score=96, Evalue=6e-21, Organism=Caenorhabditis elegans, GI115533554, Length=201, Percent_Identity=25.3731343283582, Blast_Score=69, Evalue=6e-12, Organism=Caenorhabditis elegans, GI115533556, Length=201, Percent_Identity=25.3731343283582, Blast_Score=69, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17552542, Length=278, Percent_Identity=26.6187050359712, Blast_Score=67, Evalue=3e-11, Organism=Drosophila melanogaster, GI28573708, Length=293, Percent_Identity=30.3754266211604, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI28573707, Length=293, Percent_Identity=30.3754266211604, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI24584153, Length=362, Percent_Identity=21.5469613259669, Blast_Score=73, Evalue=5e-13, Organism=Drosophila melanogaster, GI24580790, Length=289, Percent_Identity=22.8373702422145, Blast_Score=69, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004744 - InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 54262; Mature: 54131
Theoretical pI: Translated: 7.41; Mature: 7.41
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQTDAVTVNQTVKSAGRYRWSICALLFFATTINYLDRQVLSLTWSDFIAPEFHWTNNDY CCCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC GNITALFSIFYAVSLLFAGRFIDWMDTKKGFLWAIGIWSIGACLHAFCGIATSGIITGNW CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCEEECCE LVGFHGSKEIISTINDTGLVINVSVALFIFARFVLAVGEAGNFPAAIKTTAEYFPKKDRA EEEECCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC FSTSIFNAGATVGALAAPITIPFIAKSFGWEMSFIIIGALGFIWMGFWVFMYDKPERHPR HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCC VSPEELAYIQQDDIADSKLEGYVPETTSKVSFVDCFKYKQTWAFAFGKFMTDGVWWFFLF CCHHHHHHHCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WTPAYLSSVYGMDSTEAALPLFVLYMITLLSIIGGWLPTYFVEKKGMNPYEGRMRAMLIF HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AFFPLLALIAQPLGYISYWVPVIIIGIAGAAHQSWSANIFTTVGDMFPKKAIATITGIGG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCH LAGGVGSTLINKGSGVLFDYAKETEMVFMGFKGIEAGYFIIFSICAVCYLTGWIVMKSLV HHCHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHC PRYSPITNL CCCCCCCCC >Mature Secondary Structure SQTDAVTVNQTVKSAGRYRWSICALLFFATTINYLDRQVLSLTWSDFIAPEFHWTNNDY CCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC GNITALFSIFYAVSLLFAGRFIDWMDTKKGFLWAIGIWSIGACLHAFCGIATSGIITGNW CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCEEECCE LVGFHGSKEIISTINDTGLVINVSVALFIFARFVLAVGEAGNFPAAIKTTAEYFPKKDRA EEEECCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCC FSTSIFNAGATVGALAAPITIPFIAKSFGWEMSFIIIGALGFIWMGFWVFMYDKPERHPR HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCC VSPEELAYIQQDDIADSKLEGYVPETTSKVSFVDCFKYKQTWAFAFGKFMTDGVWWFFLF CCHHHHHHHCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WTPAYLSSVYGMDSTEAALPLFVLYMITLLSIIGGWLPTYFVEKKGMNPYEGRMRAMLIF HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH AFFPLLALIAQPLGYISYWVPVIIIGIAGAAHQSWSANIFTTVGDMFPKKAIATITGIGG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCH LAGGVGSTLINKGSGVLFDYAKETEMVFMGFKGIEAGYFIIFSICAVCYLTGWIVMKSLV HHCHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHC PRYSPITNL CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: galacturonate [Periplasm]; Proton [Periplasm]; glucuronate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + galacturonate [Periplasm] = galacturonate [Cytoplasm] + Proton [Cytoplasm] Proton [Periplasm] + glucuronate [Periplasm] = Proton [Cytoplasm] + glucuronate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]