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The map label for this gene is yteR [H]

Identifier: 146301988

GI number: 146301988

Start: 5132981

End: 5134180

Strand: Reverse

Name: yteR [H]

Synonym: Fjoh_4252

Alternate gene names: 146301988

Gene position: 5134180-5132981 (Counterclockwise)

Preceding gene: 146301989

Following gene: 146301987

Centisome position: 84.21

GC content: 33.83

Gene sequence:

>1200_bases
ATGAACTATAAAAAAACAGTCTTTGCATTTTTCCTGTTGTACAGCATTTTTACTGTAGGTCAGAACAATGAAAATCAAAG
TAGAATTGCAGTTTCGGCAAAAGCAAAATGGTCAGAAAAAACAGCTGTAACAATACTGAACAAATATCCAAAAGCCTGGC
AGATCGATGGAACTGAGAAACCAAAATGGGATTATAAAATGAGCTTGACTTTGTCTGCTTTTGAAAAATTGTATTTAAAA
ACGAAAGACAAAAAGTATCTCAATTACATAAAAGAATATGCAGATGAACTAATTGATGCCAATGGAAATATTGCCAAATA
TGATATTAAAGAATACAATATCGATTATGTAAATCCGGGAAAATTGTTGTTTAATTTATATGATGTAACCAAAGACAATC
GCTATTTAACGGTTATCAAACAATTAAAAACGCAGATTGAAAGCCAGCCCAGAACAGCAAGCGGCGGATTCTGGCACAAG
CAGATTTATCCTAATCAAATGTGGATTGATGGTTTGTATATGGCAGAACCTTTTTATGCGCAGTATACTGTTAAGTATGA
AAATGGTAAAAGTTTAGATGATATTGCAAAACAGTTTGAATTGGTTCATACTTATATAGTAGATAGAAAAACAGGACTGC
CTTATCAGGCTTGGGATGAAAGTAAAGAAATTGGATGGGCTGATAAAGAAACAGGAACTTCACCAACAATATGGAGCAGA
GGAATTGGCTGGTATATGATGGCCTTGGTTGAAACGCTGGATTATTATCCTAAAAATCATCCAAAACAAAAAGAATTGGT
AAGTTATTTGAATGAAATAGCAAAAAACGCAGTTCAGGCACAAAGTCCGTCAGGATTATGGTATCAGGTTGCTGATAAAC
CGGAATTGCAGGGAAATTATTTAGAATCGTCTGGTTCAGGAATGATTATTTATGTCTTGGCAAAAGGAGCAGATAAAGGA
TATTTAAACGTTTCGTATAAAAAAACAGCGCAAAAATCTTTTGATGCATTTGTAAAAGAATTTGTCAAAACAAATGAAAA
TAATGAAATTACAATTTCAAATGTTTCATCTAACGTAGGCTTAGGCGGAAAACCATTCCGCGATGGCACAAACGAATATT
ATGCTAAAAGCAAAACAAAAGACAACAGTTCGCCGGCATTAGCAGCATTTTTGCTGAGTGCAGTAGAATTAAACAAGTAA

Upstream 100 bases:

>100_bases
ATTTTACAACCCATTTTTTAAACAAGATATTTAAATTGCAACACACAAGTCACTATTAATCAAAAAATCCTTTTAATCTG
TGGCAAAACAAAATATAAGA

Downstream 100 bases:

>100_bases
AATTGATTTAAGATGATAAAGAAAAGCCATTTTAGTTTTGCCCAAATCATGCTTATAAGTATGATGCTGTTTTCATTGAA
TGCACTTTTGGCACAATCCT

Product: glycosyl hydrolase family protein

Products: NA

Alternate protein names: URH [H]

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MNYKKTVFAFFLLYSIFTVGQNNENQSRIAVSAKAKWSEKTAVTILNKYPKAWQIDGTEKPKWDYKMSLTLSAFEKLYLK
TKDKKYLNYIKEYADELIDANGNIAKYDIKEYNIDYVNPGKLLFNLYDVTKDNRYLTVIKQLKTQIESQPRTASGGFWHK
QIYPNQMWIDGLYMAEPFYAQYTVKYENGKSLDDIAKQFELVHTYIVDRKTGLPYQAWDESKEIGWADKETGTSPTIWSR
GIGWYMMALVETLDYYPKNHPKQKELVSYLNEIAKNAVQAQSPSGLWYQVADKPELQGNYLESSGSGMIIYVLAKGADKG
YLNVSYKKTAQKSFDAFVKEFVKTNENNEITISNVSSNVGLGGKPFRDGTNEYYAKSKTKDNSSPALAAFLLSAVELNK

Sequences:

>Translated_399_residues
MNYKKTVFAFFLLYSIFTVGQNNENQSRIAVSAKAKWSEKTAVTILNKYPKAWQIDGTEKPKWDYKMSLTLSAFEKLYLK
TKDKKYLNYIKEYADELIDANGNIAKYDIKEYNIDYVNPGKLLFNLYDVTKDNRYLTVIKQLKTQIESQPRTASGGFWHK
QIYPNQMWIDGLYMAEPFYAQYTVKYENGKSLDDIAKQFELVHTYIVDRKTGLPYQAWDESKEIGWADKETGTSPTIWSR
GIGWYMMALVETLDYYPKNHPKQKELVSYLNEIAKNAVQAQSPSGLWYQVADKPELQGNYLESSGSGMIIYVLAKGADKG
YLNVSYKKTAQKSFDAFVKEFVKTNENNEITISNVSSNVGLGGKPFRDGTNEYYAKSKTKDNSSPALAAFLLSAVELNK
>Mature_399_residues
MNYKKTVFAFFLLYSIFTVGQNNENQSRIAVSAKAKWSEKTAVTILNKYPKAWQIDGTEKPKWDYKMSLTLSAFEKLYLK
TKDKKYLNYIKEYADELIDANGNIAKYDIKEYNIDYVNPGKLLFNLYDVTKDNRYLTVIKQLKTQIESQPRTASGGFWHK
QIYPNQMWIDGLYMAEPFYAQYTVKYENGKSLDDIAKQFELVHTYIVDRKTGLPYQAWDESKEIGWADKETGTSPTIWSR
GIGWYMMALVETLDYYPKNHPKQKELVSYLNEIAKNAVQAQSPSGLWYQVADKPELQGNYLESSGSGMIIYVLAKGADKG
YLNVSYKKTAQKSFDAFVKEFVKTNENNEITISNVSSNVGLGGKPFRDGTNEYYAKSKTKDNSSPALAAFLLSAVELNK

Specific function: Catalyzes the hydrolysis of unsaturated rhamnogalacturonan disaccharide to yield unsaturated D- galacturonic acid and L-rhamnose. It cannot act on unsaturated glucuronyl hydrolase (UGL) substrates containing unsaturated D- glucuronic acid at the non-reduc

COG id: COG4225

COG function: function code R; Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 105 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008928
- InterPro:   IPR012341
- InterPro:   IPR010905 [H]

Pfam domain/function: PF07470 Glyco_hydro_88 [H]

EC number: NA

Molecular weight: Translated: 45723; Mature: 45723

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKKTVFAFFLLYSIFTVGQNNENQSRIAVSAKAKWSEKTAVTILNKYPKAWQIDGTEK
CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEHHCCCCEEECCCCCC
PKWDYKMSLTLSAFEKLYLKTKDKKYLNYIKEYADELIDANGNIAKYDIKEYNIDYVNPG
CCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEECCH
KLLFNLYDVTKDNRYLTVIKQLKTQIESQPRTASGGFWHKQIYPNQMWIDGLYMAEPFYA
HHEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECEEEECCCCEE
QYTVKYENGKSLDDIAKQFELVHTYIVDRKTGLPYQAWDESKEIGWADKETGTSPTIWSR
EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
GIGWYMMALVETLDYYPKNHPKQKELVSYLNEIAKNAVQAQSPSGLWYQVADKPELQGNY
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCE
LESSGSGMIIYVLAKGADKGYLNVSYKKTAQKSFDAFVKEFVKTNENNEITISNVSSNVG
EECCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
LGGKPFRDGTNEYYAKSKTKDNSSPALAAFLLSAVELNK
CCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNYKKTVFAFFLLYSIFTVGQNNENQSRIAVSAKAKWSEKTAVTILNKYPKAWQIDGTEK
CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEEHHCCCCEEECCCCCC
PKWDYKMSLTLSAFEKLYLKTKDKKYLNYIKEYADELIDANGNIAKYDIKEYNIDYVNPG
CCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEECCH
KLLFNLYDVTKDNRYLTVIKQLKTQIESQPRTASGGFWHKQIYPNQMWIDGLYMAEPFYA
HHEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEECEEEECCCCEE
QYTVKYENGKSLDDIAKQFELVHTYIVDRKTGLPYQAWDESKEIGWADKETGTSPTIWSR
EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
GIGWYMMALVETLDYYPKNHPKQKELVSYLNEIAKNAVQAQSPSGLWYQVADKPELQGNY
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCE
LESSGSGMIIYVLAKGADKGYLNVSYKKTAQKSFDAFVKEFVKTNENNEITISNVSSNVG
EECCCCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
LGGKPFRDGTNEYYAKSKTKDNSSPALAAFLLSAVELNK
CCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]