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The map label for this gene is yagH [C]

Identifier: 146301985

GI number: 146301985

Start: 5128751

End: 5130349

Strand: Reverse

Name: yagH [C]

Synonym: Fjoh_4249

Alternate gene names: 146301985

Gene position: 5130349-5128751 (Counterclockwise)

Preceding gene: 146301986

Following gene: 146301984

Centisome position: 84.15

GC content: 37.09

Gene sequence:

>1599_bases
ATGAAAAATATAAAAATCGTTATTCTTCTCCTTTCCGTTTTTTCTTTTCAAAAAAATACGGCACAAGCCTGGACACCGGA
TAATGGAGACGGAACTTACACAAATCCTATTATTCATGCCGATTATTCAGATCCAGATGTTGTAAGGGTTGGAGATGATT
TTTATATGACAGCATCTTCTTTTAACTGTATTCCCGGACTGCCGATCCTGCATTCTAAAGATTTGGTAAATTGGAAAATT
CTAAGTTATGCACTGCCAAAACAGCCTCCGTTTGATACTTATGATAAAGTACAGCACGGAAATGGCGTTTGGGCACCTTG
CATAACCTATCATAACAATGAATTTTATATCTATTATCCAGATCCTGATTTTGGTATTTACATGATAAAATCAAAAAAGG
CCGAAGGTCCATGGTCAGAACCTCTTTTAGTAAAAGCAGGAAAAGGACTTATAGATCCGAGTCCGCTTTGGGATGATGAC
GGAAAAGCCTATTTAGTACATGCATTTGCAGGAAGCCGTGCACAGATTAAAAGTTTAATTGTAGTATGCAGTATGAATGC
CGAAGGAACAATTGCGAATAACGATGAAGTTATGGTAATTGACGGACATGACGGCGAAGGCACAATCGAAGGCCCGAAAT
TCTACAAAAGAAACAATTACTATTATATTTTTGCTCCGGCAGGAGGAGTGCCTACAGGCTGGCAGACGATTTTAAGATCG
AAGAATGTTTTTGGTCCTTATGAAAAGAAAAAAGTTTTAGAACAGGGATCAACCAAAATAAACGGCCCGCACCAAGGAGC
TTGGGTACAGACACAAACTGGAGAAGACTGGTTTATTCACTTTCAGGATAAAGGCGCTTACGGACGAATTGTGCATTTAC
AACCTATGAAATGGGAAAAAGACTGGCCGGTTATGGGACAGGATTTTGACAAAAATGGAATAGGTGAACCAGTTACAACT
TATAAAAAACCAAATGTTGGCAAAAAATATCCAATTGAAAATCCGGCTGCATCAGATGAATTTAATGAGCCAAAATTAGG
ATTGCAATGGCAGTGGCAGGCAAATTCTCAAATAAACTGGGGTTTCCCTACAAGTATGGGCTATTTGAATTTGTTTTGCA
TGACAACTATTAAAGACAGCAGACGAATTTTTGAAGCTCCAAATTTATTATTGCAGAAATTCCCTGCTGAAGAATTTTCG
GCGACAGCCAAATTAACTTTTAATACAAGGCTCAACGGAGAATCGACGGGACTAATTATAATGGGATTGGATTATAGTTA
TTTGTGTTTTAAAAACGATAACGGTAAATTATATCTAAATCAAAAAACGGGAACTTTTAATAAAACGGTTTCAGAAACCG
AAACAAAACCGGTTTTGATTTCCAGCAATACAATTTATTTGAAAGTGAAAGTTAAAAAAGGCGGCATCTGCAGTTTCTTT
TACAGCTTAGACAATAAAAACTATCAGCCTATTGGAAATGATTTTACTTCAACCGAAGGAAAATGGATTGGTGCTAAAAT
GGGACTTTTTGCTTTAAGCGAAAAAGTAACAAACGATTCTGGAAATGTGGCCGTTGATTGGTTTAGGGTAACGAAATAA

Upstream 100 bases:

>100_bases
AGGATGGCAGAGTAAGTTCTCAAACTAATTCCAGACGTCTTAATTACACAAACCCGACAGGTTTTAGGACTGTCGGGTTA
AATAAAATAATAGTTTAAAA

Downstream 100 bases:

>100_bases
AATTTTAAAATGATTCAGTTAAAAAAAATCATATTACTTTTTAGTATTGCTTTGAGTTTTAGCATCCAGGCACAGAATAC
ATATAAAAACTGGTCGGATA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: 1,4-beta-D-xylan xylohydrolase; Xylan 1,4-beta-xylosidase [H]

Number of amino acids: Translated: 532; Mature: 532

Protein sequence:

>532_residues
MKNIKIVILLLSVFSFQKNTAQAWTPDNGDGTYTNPIIHADYSDPDVVRVGDDFYMTASSFNCIPGLPILHSKDLVNWKI
LSYALPKQPPFDTYDKVQHGNGVWAPCITYHNNEFYIYYPDPDFGIYMIKSKKAEGPWSEPLLVKAGKGLIDPSPLWDDD
GKAYLVHAFAGSRAQIKSLIVVCSMNAEGTIANNDEVMVIDGHDGEGTIEGPKFYKRNNYYYIFAPAGGVPTGWQTILRS
KNVFGPYEKKKVLEQGSTKINGPHQGAWVQTQTGEDWFIHFQDKGAYGRIVHLQPMKWEKDWPVMGQDFDKNGIGEPVTT
YKKPNVGKKYPIENPAASDEFNEPKLGLQWQWQANSQINWGFPTSMGYLNLFCMTTIKDSRRIFEAPNLLLQKFPAEEFS
ATAKLTFNTRLNGESTGLIIMGLDYSYLCFKNDNGKLYLNQKTGTFNKTVSETETKPVLISSNTIYLKVKVKKGGICSFF
YSLDNKNYQPIGNDFTSTEGKWIGAKMGLFALSEKVTNDSGNVAVDWFRVTK

Sequences:

>Translated_532_residues
MKNIKIVILLLSVFSFQKNTAQAWTPDNGDGTYTNPIIHADYSDPDVVRVGDDFYMTASSFNCIPGLPILHSKDLVNWKI
LSYALPKQPPFDTYDKVQHGNGVWAPCITYHNNEFYIYYPDPDFGIYMIKSKKAEGPWSEPLLVKAGKGLIDPSPLWDDD
GKAYLVHAFAGSRAQIKSLIVVCSMNAEGTIANNDEVMVIDGHDGEGTIEGPKFYKRNNYYYIFAPAGGVPTGWQTILRS
KNVFGPYEKKKVLEQGSTKINGPHQGAWVQTQTGEDWFIHFQDKGAYGRIVHLQPMKWEKDWPVMGQDFDKNGIGEPVTT
YKKPNVGKKYPIENPAASDEFNEPKLGLQWQWQANSQINWGFPTSMGYLNLFCMTTIKDSRRIFEAPNLLLQKFPAEEFS
ATAKLTFNTRLNGESTGLIIMGLDYSYLCFKNDNGKLYLNQKTGTFNKTVSETETKPVLISSNTIYLKVKVKKGGICSFF
YSLDNKNYQPIGNDFTSTEGKWIGAKMGLFALSEKVTNDSGNVAVDWFRVTK
>Mature_532_residues
MKNIKIVILLLSVFSFQKNTAQAWTPDNGDGTYTNPIIHADYSDPDVVRVGDDFYMTASSFNCIPGLPILHSKDLVNWKI
LSYALPKQPPFDTYDKVQHGNGVWAPCITYHNNEFYIYYPDPDFGIYMIKSKKAEGPWSEPLLVKAGKGLIDPSPLWDDD
GKAYLVHAFAGSRAQIKSLIVVCSMNAEGTIANNDEVMVIDGHDGEGTIEGPKFYKRNNYYYIFAPAGGVPTGWQTILRS
KNVFGPYEKKKVLEQGSTKINGPHQGAWVQTQTGEDWFIHFQDKGAYGRIVHLQPMKWEKDWPVMGQDFDKNGIGEPVTT
YKKPNVGKKYPIENPAASDEFNEPKLGLQWQWQANSQINWGFPTSMGYLNLFCMTTIKDSRRIFEAPNLLLQKFPAEEFS
ATAKLTFNTRLNGESTGLIIMGLDYSYLCFKNDNGKLYLNQKTGTFNKTVSETETKPVLISSNTIYLKVKVKKGGICSFF
YSLDNKNYQPIGNDFTSTEGKWIGAKMGLFALSEKVTNDSGNVAVDWFRVTK

Specific function: Unknown

COG id: COG3507

COG function: function code G; Beta-xylosidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 43 family [H]

Homologues:

Organism=Escherichia coli, GI1786467, Length=559, Percent_Identity=24.1502683363148, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008985
- InterPro:   IPR013320
- InterPro:   IPR006710 [H]

Pfam domain/function: PF04616 Glyco_hydro_43 [H]

EC number: =3.2.1.37 [H]

Molecular weight: Translated: 59904; Mature: 59904

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIKIVILLLSVFSFQKNTAQAWTPDNGDGTYTNPIIHADYSDPDVVRVGDDFYMTASS
CCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCEEEEECC
FNCIPGLPILHSKDLVNWKILSYALPKQPPFDTYDKVQHGNGVWAPCITYHNNEFYIYYP
CCCCCCCCEEECCCCCEEEEEEEECCCCCCCCHHHHHCCCCCEEEEEEEEECCEEEEEEC
DPDFGIYMIKSKKAEGPWSEPLLVKAGKGLIDPSPLWDDDGKAYLVHAFAGSRAQIKSLI
CCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHEEEEE
VVCSMNAEGTIANNDEVMVIDGHDGEGTIEGPKFYKRNNYYYIFAPAGGVPTGWQTILRS
EEEECCCCCEEECCCEEEEEECCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHC
KNVFGPYEKKKVLEQGSTKINGPHQGAWVQTQTGEDWFIHFQDKGAYGRIVHLQPMKWEK
CCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCEEEEEEECCCCCC
DWPVMGQDFDKNGIGEPVTTYKKPNVGKKYPIENPAASDEFNEPKLGLQWQWQANSQINW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEC
GFPTSMGYLNLFCMTTIKDSRRIFEAPNLLLQKFPAEEFSATAKLTFNTRLNGESTGLII
CCCCCCCEEEEEEEEEECCCHHHHHCCHHHHHHCCCHHHCCEEEEEEEEEECCCCCCEEE
MGLDYSYLCFKNDNGKLYLNQKTGTFNKTVSETETKPVLISSNTIYLKVKVKKGGICSFF
ECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCEEEEE
YSLDNKNYQPIGNDFTSTEGKWIGAKMGLFALSEKVTNDSGNVAVDWFRVTK
EEECCCCCCCCCCCCCCCCCEEEEEECCCEEHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKNIKIVILLLSVFSFQKNTAQAWTPDNGDGTYTNPIIHADYSDPDVVRVGDDFYMTASS
CCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEEEECCCEEEEECC
FNCIPGLPILHSKDLVNWKILSYALPKQPPFDTYDKVQHGNGVWAPCITYHNNEFYIYYP
CCCCCCCCEEECCCCCEEEEEEEECCCCCCCCHHHHHCCCCCEEEEEEEEECCEEEEEEC
DPDFGIYMIKSKKAEGPWSEPLLVKAGKGLIDPSPLWDDDGKAYLVHAFAGSRAQIKSLI
CCCCCEEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCHHHEEEEE
VVCSMNAEGTIANNDEVMVIDGHDGEGTIEGPKFYKRNNYYYIFAPAGGVPTGWQTILRS
EEEECCCCCEEECCCEEEEEECCCCCCCCCCCCEEECCCEEEEEECCCCCCHHHHHHHHC
KNVFGPYEKKKVLEQGSTKINGPHQGAWVQTQTGEDWFIHFQDKGAYGRIVHLQPMKWEK
CCCCCCHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCCCEEEEEEECCCCCC
DWPVMGQDFDKNGIGEPVTTYKKPNVGKKYPIENPAASDEFNEPKLGLQWQWQANSQINW
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEC
GFPTSMGYLNLFCMTTIKDSRRIFEAPNLLLQKFPAEEFSATAKLTFNTRLNGESTGLII
CCCCCCCEEEEEEEEEECCCHHHHHCCHHHHHHCCCHHHCCEEEEEEEEEECCCCCCEEE
MGLDYSYLCFKNDNGKLYLNQKTGTFNKTVSETETKPVLISSNTIYLKVKVKKGGICSFF
ECCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEEEEECCCCEEEEE
YSLDNKNYQPIGNDFTSTEGKWIGAKMGLFALSEKVTNDSGNVAVDWFRVTK
EEECCCCCCCCCCCCCCCCCEEEEEECCCEEHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA