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The map label for this gene is yagR [H]

Identifier: 146301936

GI number: 146301936

Start: 5050399

End: 5052600

Strand: Reverse

Name: yagR [H]

Synonym: Fjoh_4200

Alternate gene names: 146301936

Gene position: 5052600-5050399 (Counterclockwise)

Preceding gene: 146301937

Following gene: 146301924

Centisome position: 82.87

GC content: 39.78

Gene sequence:

>2202_bases
ATGAGCAAGACAAGTAATATTAATAGAGTTGACGGATTTGCTAAAGTAACGGGTTCAGCAACTTATTCGGCAGAATATAA
AACGGCTGGTGTTGTCTACGCCTGTTTGGTGGGAAGCACGATTGCAAAAGGAAGAATCAAAACCATAGATACAAAAAAAG
CCGAATGGGCGCCGGGAGTTTTGGCGGTTATTACGCATTTAAATGTAGATAAACCTGTAGGTTACGAAAAAGTAAAAGAC
AAACATAATTTTGGTCAGCCTTTGCAGATTTTCAAAGACGATTCGGTTTTGTATTATGATCAGCCAATCGCTTTAGTTAT
TGCCGATACTTTTGAACGTATGCAATATGCTGCGAGTTTAATTAAAGCCGATTATTTTAAAGAAGAACATTCGACTGAAC
TAAAAAAAGCAGCTGATAAAGAGAAAAAAGTCGAAACAGATAAAGGAAATGATTACCATCGCGGTGAACATGACGGATAT
AAAAATGCAGAGGTAATTTTAGAAGCCGAGTACACCATTCCAACAGAAGTGCATAACCCAATGGAACTGGCCAATATTAT
TGCCAAATGGGACGGAAATAAGCCTGTTTTATATACTAAAAGCCAAGGTGTTGAAGGAACGCGTAAAAGTGTGGCTGGAG
TTTTTGGAGTTTCAATTGAAGATGTTGAGGTACATTCTGAATATCTTGGTGGTGCATTCGGTATGGGATTACACACCTGG
CCGTATGAAATTGCAGCCTTAATTGGTTCTAAAAAATTAAATCGTCCGGTAAAATTAGTTTTACACCGCGAGCAGATGTT
TACCAATGTAGGTTTCAGACCTTATACGATTCAGAAAATGGGTCTTGGCGCAACAAAAGCCGGAAAACTTACTGGCTTAA
CGCACGAAGCCGTTGCCATGACATCTAGCTACGAGGATTTTATGGAAGGAACCGTAAACATGTCTCGATTTATTTATGAT
TGTGCCAATGTTTCGACTCGTTATAGAATTGTGCCTTTGGATACCTGCACACCAATTTGGATGCGCGGCCCGGGTGAAGC
GACAGGTTCTTTTGCCTTAGAATGTGCCATGGATGAACTGGCGCATAAATTAAATATGGACCCGATTGAATTTCGAAAGC
TGAATTATGCCGAGAAAGATTTGGAACAAAATAAACCATGGAGCAGTAAATATCTTCTGGAATGTTACGAAGGCGGAATG
GAGCGCATTGGCTGGAAAAACCGTAAAAATGAACCGGGTTCTGTGAAAGAAGGAAACTGGCTGGTTGGCTACGGAATGGG
AACGGGAACTTTTGGCTGTTATAGAAGCCCGACTTCTGTAAAAGCAAAATTTTTACCAGATGGAAATTTAGTACTGCAAT
GCAGTGTAAATGATATGGGACCCGGGACAGCAACCATGATGACGGCGATTGGAGCTGAAATCACAGGTCTTCCTGCCGAG
AATGTCATCATTGAAATGGGAAAAAGCGGATTACCAAAAGGTCCTACGCAGGGCGGATCGGCTACGACTTCGTCTGTTGG
TTCTGCAGTGCATGATTCTTGTAATTTACTAGTTAGTAAAGTATTGGAATTGGCAGCGCAAAATCCAACTTTTAAGGGAA
TCGCCATTACGGATTTAACTTTTGAAAATGGTTTAATTTCTTCTAAAAAAGACAAAACAAAAACGCTTGCTTTAACTTCT
TTACTAACCGTTAATAAATTAGAAGGATTAGAAGTTGAAAATCTCTCAAAGGGAGCAGAAGAAGCGAAGAAATATTCTAT
TTATTCGTTTTCAGTTCATTTTGTAAAAGTATTAGTGAATCTGAATTTAGGGAAAATACGATTGGCACACGTGGTTTCTT
GTGCTGATATTGGAACGGTTATTAATCAAAAAACATCAGCTGGACAAATGTTTGGCGGTGCAGTAGGAGGTATCGGGATG
GGATTAATGGAAGCATTAGAAATCGATCATCGTTTCGGACGTCCGATCAATAACAATTTTGCAGATTATCATGTTCCCGT
AAATGCTGATATTGAAAAGCAGGAAGTTTTCTTCGTCAATAAAAAAGATCCAATCAGCAACCCAATGGGAACAAAAGGTC
TTGGGGAAACAGCTTTAGTCGGAATGGCGCCTGCCATTGCAAATGCCGTTTTTAACGCCACCGGAAAACGTGTACGGGAT
TTACCGATTAGGTTGGATAAAATTATAGAAACTGTTGTTTAA

Upstream 100 bases:

>100_bases
AAGGCGCAAGAGGATACGGTGATAATGATTTTAAGATTACACTTGGAGCCAATGCCATAACAGAAGCACTTACTATAGCA
GCATCAAAATAATTAGAATT

Downstream 100 bases:

>100_bases
ATTTTTAGCCACAAATTACACGAATTTGCACTAATTTTTTTCTTCCAATTGATGATTTAAATTTGTGAAAATTCGTGTAA
TTCGCGGCAAAAAAAAAGTC

Product: aldehyde oxidase and xanthine dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 733; Mature: 732

Protein sequence:

>733_residues
MSKTSNINRVDGFAKVTGSATYSAEYKTAGVVYACLVGSTIAKGRIKTIDTKKAEWAPGVLAVITHLNVDKPVGYEKVKD
KHNFGQPLQIFKDDSVLYYDQPIALVIADTFERMQYAASLIKADYFKEEHSTELKKAADKEKKVETDKGNDYHRGEHDGY
KNAEVILEAEYTIPTEVHNPMELANIIAKWDGNKPVLYTKSQGVEGTRKSVAGVFGVSIEDVEVHSEYLGGAFGMGLHTW
PYEIAALIGSKKLNRPVKLVLHREQMFTNVGFRPYTIQKMGLGATKAGKLTGLTHEAVAMTSSYEDFMEGTVNMSRFIYD
CANVSTRYRIVPLDTCTPIWMRGPGEATGSFALECAMDELAHKLNMDPIEFRKLNYAEKDLEQNKPWSSKYLLECYEGGM
ERIGWKNRKNEPGSVKEGNWLVGYGMGTGTFGCYRSPTSVKAKFLPDGNLVLQCSVNDMGPGTATMMTAIGAEITGLPAE
NVIIEMGKSGLPKGPTQGGSATTSSVGSAVHDSCNLLVSKVLELAAQNPTFKGIAITDLTFENGLISSKKDKTKTLALTS
LLTVNKLEGLEVENLSKGAEEAKKYSIYSFSVHFVKVLVNLNLGKIRLAHVVSCADIGTVINQKTSAGQMFGGAVGGIGM
GLMEALEIDHRFGRPINNNFADYHVPVNADIEKQEVFFVNKKDPISNPMGTKGLGETALVGMAPAIANAVFNATGKRVRD
LPIRLDKIIETVV

Sequences:

>Translated_733_residues
MSKTSNINRVDGFAKVTGSATYSAEYKTAGVVYACLVGSTIAKGRIKTIDTKKAEWAPGVLAVITHLNVDKPVGYEKVKD
KHNFGQPLQIFKDDSVLYYDQPIALVIADTFERMQYAASLIKADYFKEEHSTELKKAADKEKKVETDKGNDYHRGEHDGY
KNAEVILEAEYTIPTEVHNPMELANIIAKWDGNKPVLYTKSQGVEGTRKSVAGVFGVSIEDVEVHSEYLGGAFGMGLHTW
PYEIAALIGSKKLNRPVKLVLHREQMFTNVGFRPYTIQKMGLGATKAGKLTGLTHEAVAMTSSYEDFMEGTVNMSRFIYD
CANVSTRYRIVPLDTCTPIWMRGPGEATGSFALECAMDELAHKLNMDPIEFRKLNYAEKDLEQNKPWSSKYLLECYEGGM
ERIGWKNRKNEPGSVKEGNWLVGYGMGTGTFGCYRSPTSVKAKFLPDGNLVLQCSVNDMGPGTATMMTAIGAEITGLPAE
NVIIEMGKSGLPKGPTQGGSATTSSVGSAVHDSCNLLVSKVLELAAQNPTFKGIAITDLTFENGLISSKKDKTKTLALTS
LLTVNKLEGLEVENLSKGAEEAKKYSIYSFSVHFVKVLVNLNLGKIRLAHVVSCADIGTVINQKTSAGQMFGGAVGGIGM
GLMEALEIDHRFGRPINNNFADYHVPVNADIEKQEVFFVNKKDPISNPMGTKGLGETALVGMAPAIANAVFNATGKRVRD
LPIRLDKIIETVV
>Mature_732_residues
SKTSNINRVDGFAKVTGSATYSAEYKTAGVVYACLVGSTIAKGRIKTIDTKKAEWAPGVLAVITHLNVDKPVGYEKVKDK
HNFGQPLQIFKDDSVLYYDQPIALVIADTFERMQYAASLIKADYFKEEHSTELKKAADKEKKVETDKGNDYHRGEHDGYK
NAEVILEAEYTIPTEVHNPMELANIIAKWDGNKPVLYTKSQGVEGTRKSVAGVFGVSIEDVEVHSEYLGGAFGMGLHTWP
YEIAALIGSKKLNRPVKLVLHREQMFTNVGFRPYTIQKMGLGATKAGKLTGLTHEAVAMTSSYEDFMEGTVNMSRFIYDC
ANVSTRYRIVPLDTCTPIWMRGPGEATGSFALECAMDELAHKLNMDPIEFRKLNYAEKDLEQNKPWSSKYLLECYEGGME
RIGWKNRKNEPGSVKEGNWLVGYGMGTGTFGCYRSPTSVKAKFLPDGNLVLQCSVNDMGPGTATMMTAIGAEITGLPAEN
VIIEMGKSGLPKGPTQGGSATTSSVGSAVHDSCNLLVSKVLELAAQNPTFKGIAITDLTFENGLISSKKDKTKTLALTSL
LTVNKLEGLEVENLSKGAEEAKKYSIYSFSVHFVKVLVNLNLGKIRLAHVVSCADIGTVINQKTSAGQMFGGAVGGIGMG
LMEALEIDHRFGRPINNNFADYHVPVNADIEKQEVFFVNKKDPISNPMGTKGLGETALVGMAPAIANAVFNATGKRVRDL
PIRLDKIIETVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI91823271, Length=726, Percent_Identity=24.2424242424242, Blast_Score=117, Evalue=6e-26,
Organism=Homo sapiens, GI71773480, Length=758, Percent_Identity=23.2189973614776, Blast_Score=100, Evalue=5e-21,
Organism=Escherichia coli, GI1786478, Length=734, Percent_Identity=35.4223433242507, Blast_Score=417, Evalue=1e-117,
Organism=Escherichia coli, GI1789230, Length=757, Percent_Identity=26.8163804491413, Blast_Score=192, Evalue=7e-50,
Organism=Escherichia coli, GI1789246, Length=800, Percent_Identity=24.625, Blast_Score=160, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI17539860, Length=741, Percent_Identity=23.2118758434548, Blast_Score=119, Evalue=5e-27,
Organism=Caenorhabditis elegans, GI17540638, Length=754, Percent_Identity=23.7400530503979, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI32566215, Length=728, Percent_Identity=22.3901098901099, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24647195, Length=744, Percent_Identity=22.4462365591398, Blast_Score=124, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24647197, Length=736, Percent_Identity=22.554347826087, Blast_Score=120, Evalue=4e-27,
Organism=Drosophila melanogaster, GI24647193, Length=760, Percent_Identity=23.1578947368421, Blast_Score=113, Evalue=4e-25,
Organism=Drosophila melanogaster, GI24647199, Length=725, Percent_Identity=22.0689655172414, Blast_Score=104, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24647201, Length=746, Percent_Identity=22.5201072386059, Blast_Score=98, Evalue=2e-20,
Organism=Drosophila melanogaster, GI17737937, Length=719, Percent_Identity=22.3922114047288, Blast_Score=84, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000674
- InterPro:   IPR008274 [H]

Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 79932; Mature: 79801

Theoretical pI: Translated: 7.60; Mature: 7.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTSNINRVDGFAKVTGSATYSAEYKTAGVVYACLVGSTIAKGRIKTIDTKKAEWAPGV
CCCCCCCCHHCCCEEECCCEEEECCCCCCHHHHHHHHCCHHCCCCEEEECCCCCCCCCCH
LAVITHLNVDKPVGYEKVKDKHNFGQPLQIFKDDSVLYYDQPIALVIADTFERMQYAASL
HHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEECCCEEEECCCEEEEEHHHHHHHHHHHHH
IKADYFKEEHSTELKKAADKEKKVETDKGNDYHRGEHDGYKNAEVILEAEYTIPTEVHNP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHCCCH
MELANIIAKWDGNKPVLYTKSQGVEGTRKSVAGVFGVSIEDVEVHSEYLGGAFGMGLHTW
HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCEEHHHHHHHHHCCHHCCCCCCC
PYEIAALIGSKKLNRPVKLVLHREQMFTNVGFRPYTIQKMGLGATKAGKLTGLTHEAVAM
HHHHHHHHCCHHCCCCCEEEEEHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHH
TSSYEDFMEGTVNMSRFIYDCANVSTRYRIVPLDTCTPIWMRGPGEATGSFALECAMDEL
HCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEECCCCCCCCCHHHHHHHHHH
AHKLNMDPIEFRKLNYAEKDLEQNKPWSSKYLLECYEGGMERIGWKNRKNEPGSVKEGNW
HHHCCCCHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCE
LVGYGMGTGTFGCYRSPTSVKAKFLPDGNLVLQCSVNDMGPGTATMMTAIGAEITGLPAE
EEEECCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
NVIIEMGKSGLPKGPTQGGSATTSSVGSAVHDSCNLLVSKVLELAAQNPTFKGIAITDLT
CEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
FENGLISSKKDKTKTLALTSLLTVNKLEGLEVENLSKGAEEAKKYSIYSFSVHFVKVLVN
ECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEEHHHHHHHHHH
LNLGKIRLAHVVSCADIGTVINQKTSAGQMFGGAVGGIGMGLMEALEIDHRFGRPINNNF
CCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
ADYHVPVNADIEKQEVFFVNKKDPISNPMGTKGLGETALVGMAPAIANAVFNATGKRVRD
CEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHC
LPIRLDKIIETVV
CCHHHHHHHHHHC
>Mature Secondary Structure 
SKTSNINRVDGFAKVTGSATYSAEYKTAGVVYACLVGSTIAKGRIKTIDTKKAEWAPGV
CCCCCCCHHCCCEEECCCEEEECCCCCCHHHHHHHHCCHHCCCCEEEECCCCCCCCCCH
LAVITHLNVDKPVGYEKVKDKHNFGQPLQIFKDDSVLYYDQPIALVIADTFERMQYAASL
HHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEECCCEEEECCCEEEEEHHHHHHHHHHHHH
IKADYFKEEHSTELKKAADKEKKVETDKGNDYHRGEHDGYKNAEVILEAEYTIPTEVHNP
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHCCCH
MELANIIAKWDGNKPVLYTKSQGVEGTRKSVAGVFGVSIEDVEVHSEYLGGAFGMGLHTW
HHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCEEHHHHHHHHHCCHHCCCCCCC
PYEIAALIGSKKLNRPVKLVLHREQMFTNVGFRPYTIQKMGLGATKAGKLTGLTHEAVAM
HHHHHHHHCCHHCCCCCEEEEEHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHH
TSSYEDFMEGTVNMSRFIYDCANVSTRYRIVPLDTCTPIWMRGPGEATGSFALECAMDEL
HCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEECCCCCCCCCHHHHHHHHHH
AHKLNMDPIEFRKLNYAEKDLEQNKPWSSKYLLECYEGGMERIGWKNRKNEPGSVKEGNW
HHHCCCCHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCE
LVGYGMGTGTFGCYRSPTSVKAKFLPDGNLVLQCSVNDMGPGTATMMTAIGAEITGLPAE
EEEECCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCC
NVIIEMGKSGLPKGPTQGGSATTSSVGSAVHDSCNLLVSKVLELAAQNPTFKGIAITDLT
CEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
FENGLISSKKDKTKTLALTSLLTVNKLEGLEVENLSKGAEEAKKYSIYSFSVHFVKVLVN
ECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEEEHHHHHHHHHH
LNLGKIRLAHVVSCADIGTVINQKTSAGQMFGGAVGGIGMGLMEALEIDHRFGRPINNNF
CCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
ADYHVPVNADIEKQEVFFVNKKDPISNPMGTKGLGETALVGMAPAIANAVFNATGKRVRD
CEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHC
LPIRLDKIIETVV
CCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]