Click here to switch to the map view.

The map label for this gene is ypdB [C]

Identifier: 146301706

GI number: 146301706

Start: 4740992

End: 4741681

Strand: Reverse

Name: ypdB [C]

Synonym: Fjoh_3968

Alternate gene names: 146301706

Gene position: 4741681-4740992 (Counterclockwise)

Preceding gene: 146301707

Following gene: 146301705

Centisome position: 77.77

GC content: 32.75

Gene sequence:

>690_bases
ATGAAAAAAATAAATTGTATCATATTAGACGACGAACCTTTTGCAGTAAAATTACTGGCAGATTATGCCTCAAAAGTGCC
AAGGCTGAATGTTTTATATGCCGATTCTGATGTTTTTAAGGCCATTGAAATACTAAACAACGAATCTGTCGACTTGGTTT
TTATCGATATCCAAATGCCGCAGTTAACCGGTTTAGAATTAATGCAGATGTTCAATCAAAAGCACAATTTCATTATTACT
TCGGCGTATCCGGAATATGCTTTAGATGTTTTTCAGTTCCATGTTATTGATTATCTGCTGAAACCTATTGTTTTTAATCG
ATTTTATCAAAGTGTTGAGAAATTTATACGCTGGCAGGAAACCTTTCAAAATCTGGATTCAGAAGATTATTTATTTGTAA
AAGCCGATAGAAAACACCATAAAATAGCGACAGATCATATTTTGTATATCGAAGGCTTAAAAGATTATATCCGAATTCAT
ACTAAAGATGAAAAAATTATGGTTTTGGAGAATATGAAAGACATTTTAGAGAAACTGCCGTTAAATCAATTTGTGCGCAT
TCATCGTTCGTTTATTATTCCCAAAAACAAAATCAAGGTCATCGAAGGCAACCAGATTAAGATGACAAACGGGGAATTTC
TGCCAATAGGCGAAACTTATAGAAAACTAATAAGTGACTGGTTAAGTTAA

Upstream 100 bases:

>100_bases
ACCTCAAAAAACGATTAGAAATATATTATCCGCAAAAACATCAAATAAAATTTACGAACCAAAACAATCAGTTTACAGCC
GAACTTGAAATAGATTTAAA

Downstream 100 bases:

>100_bases
AAAGTAAAAAGCTCTCAAAATAATTGGGAGTTTTTTGTTTATAAAGCTGATTTTCTTCTTAATAAATTACAATTTCGTTT
TAATAAATCAAATGTTTTCA

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKKINCIILDDEPFAVKLLADYASKVPRLNVLYADSDVFKAIEILNNESVDLVFIDIQMPQLTGLELMQMFNQKHNFIIT
SAYPEYALDVFQFHVIDYLLKPIVFNRFYQSVEKFIRWQETFQNLDSEDYLFVKADRKHHKIATDHILYIEGLKDYIRIH
TKDEKIMVLENMKDILEKLPLNQFVRIHRSFIIPKNKIKVIEGNQIKMTNGEFLPIGETYRKLISDWLS

Sequences:

>Translated_229_residues
MKKINCIILDDEPFAVKLLADYASKVPRLNVLYADSDVFKAIEILNNESVDLVFIDIQMPQLTGLELMQMFNQKHNFIIT
SAYPEYALDVFQFHVIDYLLKPIVFNRFYQSVEKFIRWQETFQNLDSEDYLFVKADRKHHKIATDHILYIEGLKDYIRIH
TKDEKIMVLENMKDILEKLPLNQFVRIHRSFIIPKNKIKVIEGNQIKMTNGEFLPIGETYRKLISDWLS
>Mature_229_residues
MKKINCIILDDEPFAVKLLADYASKVPRLNVLYADSDVFKAIEILNNESVDLVFIDIQMPQLTGLELMQMFNQKHNFIIT
SAYPEYALDVFQFHVIDYLLKPIVFNRFYQSVEKFIRWQETFQNLDSEDYLFVKADRKHHKIATDHILYIEGLKDYIRIH
TKDEKIMVLENMKDILEKLPLNQFVRIHRSFIIPKNKIKVIEGNQIKMTNGEFLPIGETYRKLISDWLS

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=209, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082052, Length=247, Percent_Identity=24.2914979757085, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27163; Mature: 27163

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKINCIILDDEPFAVKLLADYASKVPRLNVLYADSDVFKAIEILNNESVDLVFIDIQMP
CCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEEEEEEEEECC
QLTGLELMQMFNQKHNFIITSAYPEYALDVFQFHVIDYLLKPIVFNRFYQSVEKFIRWQE
CCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFQNLDSEDYLFVKADRKHHKIATDHILYIEGLKDYIRIHTKDEKIMVLENMKDILEKLP
HHHCCCCCCEEEEEECCCCCCCCCCCEEEEECCHHHEEEECCCCEEEEHHHHHHHHHHCC
LNQFVRIHRSFIIPKNKIKVIEGNQIKMTNGEFLPIGETYRKLISDWLS
HHHHHHHHHHHCCCCCCEEEEECCEEEECCCCEEECCHHHHHHHHHHCC
>Mature Secondary Structure
MKKINCIILDDEPFAVKLLADYASKVPRLNVLYADSDVFKAIEILNNESVDLVFIDIQMP
CCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEEEEEEEEECC
QLTGLELMQMFNQKHNFIITSAYPEYALDVFQFHVIDYLLKPIVFNRFYQSVEKFIRWQE
CCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFQNLDSEDYLFVKADRKHHKIATDHILYIEGLKDYIRIHTKDEKIMVLENMKDILEKLP
HHHCCCCCCEEEEEECCCCCCCCCCCEEEEECCHHHEEEECCCCEEEEHHHHHHHHHHCC
LNQFVRIHRSFIIPKNKIKVIEGNQIKMTNGEFLPIGETYRKLISDWLS
HHHHHHHHHHHCCCCCCEEEEECCEEEECCCCEEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]