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The map label for this gene is 146301685

Identifier: 146301685

GI number: 146301685

Start: 4708542

End: 4709084

Strand: Reverse

Name: 146301685

Synonym: Fjoh_3947

Alternate gene names: NA

Gene position: 4709084-4708542 (Counterclockwise)

Preceding gene: 146301686

Following gene: 146301684

Centisome position: 77.24

GC content: 33.89

Gene sequence:

>543_bases
ATGAAGGGTGAAAAGAGAGATATTGATTTATGGAGTCAAATAAAAAAAGGAGATGTTCACGCTTATCATGAATTATATGA
TCGGTATATAAATGTGCTTTTTACGTTTGGAATGCAGTACACTAATGACGAAACTTTAGTGCAGGATGCCATACATGATA
TTTTTGTAGACCTTCACCGTTACCGCAATACAATTGCCTCAGATGTTGTTGTAAAATCCTATCTTTTCACATCACTTCGA
AATGATATTTTTAAGAAATTAAAATCGCAGACCAAAATCGTACACCTCGATATTGTTTCTGAAGGTTCTTATAAAACCGA
TTCTGCCGAAGATGAACTTATCTTTAGTGAAACTACTTTAAATAAAAATGCCAGTTTAGCTCTGGCTTTATCTTCCCTTA
CCCCAAAACAGCGTAATGCACTTCATCTTCGTTTTAGCGAAGACCTCTCTTATGAGGAAATTTCTTCTACTTTAGAAATT
AGCTTAGAATCATGCAGAACATTGATTTATAGGTCTTTAAAGGAATTACGAGCTAAGCTTTAA

Upstream 100 bases:

>100_bases
TTTTTTACATTGTTTGAAATAATTATGAAAAATTAATTGAAAATTTTTGAAATTCTTTAGATTTGTATATAAAACAAGTC
ATAAAGCGGAAGAATCTTCA

Downstream 100 bases:

>100_bases
AAAAACTTTAAAAAAACATTATTTTTTTTGTCTATGTTTTTGCCTTTTAGTTCTTATAGGAATATAGAGATTCTAAAAGA
AAAATATTTTGTACCCAAAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase ECF-Type Sigma Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MKGEKRDIDLWSQIKKGDVHAYHELYDRYINVLFTFGMQYTNDETLVQDAIHDIFVDLHRYRNTIASDVVVKSYLFTSLR
NDIFKKLKSQTKIVHLDIVSEGSYKTDSAEDELIFSETTLNKNASLALALSSLTPKQRNALHLRFSEDLSYEEISSTLEI
SLESCRTLIYRSLKELRAKL

Sequences:

>Translated_180_residues
MKGEKRDIDLWSQIKKGDVHAYHELYDRYINVLFTFGMQYTNDETLVQDAIHDIFVDLHRYRNTIASDVVVKSYLFTSLR
NDIFKKLKSQTKIVHLDIVSEGSYKTDSAEDELIFSETTLNKNASLALALSSLTPKQRNALHLRFSEDLSYEEISSTLEI
SLESCRTLIYRSLKELRAKL
>Mature_180_residues
MKGEKRDIDLWSQIKKGDVHAYHELYDRYINVLFTFGMQYTNDETLVQDAIHDIFVDLHRYRNTIASDVVVKSYLFTSLR
NDIFKKLKSQTKIVHLDIVSEGSYKTDSAEDELIFSETTLNKNASLALALSSLTPKQRNALHLRFSEDLSYEEISSTLEI
SLESCRTLIYRSLKELRAKL

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20889; Mature: 20889

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGEKRDIDLWSQIKKGDVHAYHELYDRYINVLFTFGMQYTNDETLVQDAIHDIFVDLHR
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
YRNTIASDVVVKSYLFTSLRNDIFKKLKSQTKIVHLDIVSEGSYKTDSAEDELIFSETTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCEEEECCCC
NKNASLALALSSLTPKQRNALHLRFSEDLSYEEISSTLEISLESCRTLIYRSLKELRAKL
CCCCHHEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKGEKRDIDLWSQIKKGDVHAYHELYDRYINVLFTFGMQYTNDETLVQDAIHDIFVDLHR
CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
YRNTIASDVVVKSYLFTSLRNDIFKKLKSQTKIVHLDIVSEGSYKTDSAEDELIFSETTL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCEEEECCCC
NKNASLALALSSLTPKQRNALHLRFSEDLSYEEISSTLEISLESCRTLIYRSLKELRAKL
CCCCHHEEEECCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA