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The map label for this gene is xerC [H]

Identifier: 146301412

GI number: 146301412

Start: 4364593

End: 4365468

Strand: Reverse

Name: xerC [H]

Synonym: Fjoh_3670

Alternate gene names: 146301412

Gene position: 4365468-4364593 (Counterclockwise)

Preceding gene: 146301413

Following gene: 146301411

Centisome position: 71.6

GC content: 39.84

Gene sequence:

>876_bases
ATGGAAAACAAGAAACCCGATCTGGAAAATTACCTGAGAGGAATTGTAGCAGAGAAGACAGCGCAAAGCTATCTCTATAC
AATCAATCATTTTTTAAAGACCAATCCAAAGGCTAAAAGATACCAGTACAAAGATATAGTCAAATACATGGATAAAATCA
GCCAGAAACAGTCAAACGTGCAGTACCGAATCAGAATACTCTCAGCCATTAAAAAATATTATGACTATCTGGTGATGTAC
GGCTATAGAAATGACCATCCCTGCAGAAAACTTAATATCAAGATTAAGGGCAACCAGACCATTCAGGTGCAGGATCTGTT
CAACAGAACAGAACTGCAGCTTTTAATGGAACGCGAGAACCGCTACAAACATCTTGACATGAGAAACAATGTTCTGATTT
CACTTTTGATCTATCAGGGGCTGGCAAGTGATGAAATAGCAAGGCTGGCTGTAAAAGATATTGATCTGGATAACGGCACA
GTTTACATAAAAGGCTCTGCCAATCTCAATAAAAGAACGCTGGAGCTTGTGCCTAAGCAGATGATACTGTTTCATAATTA
CATAAATGAAACACGTCCTGCCTTACTGCGCGGGAGCAGTGATAAATTCATATTGACAAAGCTTGGACAGCCCATTGTTG
TGAACAGCATTCATGCCATGATTGAGCCGTTAAGAGGATTATTCCCAGACAGAAAACTAAACCCTCAGACTATCAGAATG
AGCGTGATCTGCAACTGGCTTAACGAGAAAAACATTTCATTGGAAAGAGTTCAGGAACTGGCAGGGCATAAATGGCCGGG
AACGACCGAGAAATATATCAAAGTCAACAGCTCACATCAGAGAGAACTGATAAACAGATATTTTCCAAGTATTTAA

Upstream 100 bases:

>100_bases
TACGCACTTTTCTGGGGCATACCCAGATCAATACCACCTACATATACGCTGTCCAGAACAAGAAAAGAAAACCAGTTGTA
AACTTCTAAAAACCTAACCA

Downstream 100 bases:

>100_bases
TGCAATAAAGATTGATATTAAACTAATCTTAAAGTGTAAATAAATTATACAAAATGTATAATTTATTTGTACATTTGTCT
AACGAATAATTTCAGATAAT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MENKKPDLENYLRGIVAEKTAQSYLYTINHFLKTNPKAKRYQYKDIVKYMDKISQKQSNVQYRIRILSAIKKYYDYLVMY
GYRNDHPCRKLNIKIKGNQTIQVQDLFNRTELQLLMERENRYKHLDMRNNVLISLLIYQGLASDEIARLAVKDIDLDNGT
VYIKGSANLNKRTLELVPKQMILFHNYINETRPALLRGSSDKFILTKLGQPIVVNSIHAMIEPLRGLFPDRKLNPQTIRM
SVICNWLNEKNISLERVQELAGHKWPGTTEKYIKVNSSHQRELINRYFPSI

Sequences:

>Translated_291_residues
MENKKPDLENYLRGIVAEKTAQSYLYTINHFLKTNPKAKRYQYKDIVKYMDKISQKQSNVQYRIRILSAIKKYYDYLVMY
GYRNDHPCRKLNIKIKGNQTIQVQDLFNRTELQLLMERENRYKHLDMRNNVLISLLIYQGLASDEIARLAVKDIDLDNGT
VYIKGSANLNKRTLELVPKQMILFHNYINETRPALLRGSSDKFILTKLGQPIVVNSIHAMIEPLRGLFPDRKLNPQTIRM
SVICNWLNEKNISLERVQELAGHKWPGTTEKYIKVNSSHQRELINRYFPSI
>Mature_291_residues
MENKKPDLENYLRGIVAEKTAQSYLYTINHFLKTNPKAKRYQYKDIVKYMDKISQKQSNVQYRIRILSAIKKYYDYLVMY
GYRNDHPCRKLNIKIKGNQTIQVQDLFNRTELQLLMERENRYKHLDMRNNVLISLLIYQGLASDEIARLAVKDIDLDNGT
VYIKGSANLNKRTLELVPKQMILFHNYINETRPALLRGSSDKFILTKLGQPIVVNSIHAMIEPLRGLFPDRKLNPQTIRM
SVICNWLNEKNISLERVQELAGHKWPGTTEKYIKVNSSHQRELINRYFPSI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=229, Percent_Identity=27.0742358078603, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34279; Mature: 34279

Theoretical pI: Translated: 10.22; Mature: 10.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENKKPDLENYLRGIVAEKTAQSYLYTINHFLKTNPKAKRYQYKDIVKYMDKISQKQSNV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCH
QYRIRILSAIKKYYDYLVMYGYRNDHPCRKLNIKIKGNQTIQVQDLFNRTELQLLMEREN
HHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEECCCCEEEHHHHHCHHHHHHHHHHHH
RYKHLDMRNNVLISLLIYQGLASDEIARLAVKDIDLDNGTVYIKGSANLNKRTLELVPKQ
HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHHH
MILFHNYINETRPALLRGSSDKFILTKLGQPIVVNSIHAMIEPLRGLFPDRKLNPQTIRM
HHHHHHHHHHCCCHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHEEH
SVICNWLNEKNISLERVQELAGHKWPGTTEKYIKVNSSHQRELINRYFPSI
HHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHEEEECCHHHHHHHHHHCCCC
>Mature Secondary Structure
MENKKPDLENYLRGIVAEKTAQSYLYTINHFLKTNPKAKRYQYKDIVKYMDKISQKQSNV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCH
QYRIRILSAIKKYYDYLVMYGYRNDHPCRKLNIKIKGNQTIQVQDLFNRTELQLLMEREN
HHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEECCCCEEEHHHHHCHHHHHHHHHHHH
RYKHLDMRNNVLISLLIYQGLASDEIARLAVKDIDLDNGTVYIKGSANLNKRTLELVPKQ
HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHEEECCCCEEEEEECCCCCHHHHHHHHHH
MILFHNYINETRPALLRGSSDKFILTKLGQPIVVNSIHAMIEPLRGLFPDRKLNPQTIRM
HHHHHHHHHHCCCHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHEEH
SVICNWLNEKNISLERVQELAGHKWPGTTEKYIKVNSSHQRELINRYFPSI
HHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHEEEECCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA