| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301265
Identifier: 146301265
GI number: 146301265
Start: 4198025
End: 4199398
Strand: Reverse
Name: 146301265
Synonym: Fjoh_3523
Alternate gene names: NA
Gene position: 4199398-4198025 (Counterclockwise)
Preceding gene: 146301266
Following gene: 146301264
Centisome position: 68.88
GC content: 36.39
Gene sequence:
>1374_bases ATGATTAGAATTTCAGTTTTATTTTTAGCTTTTGCTTTTTTTAGTTGTGGATCGAATGATAAGTCGAAAGAAAATGCACA GGAAAATACCTCTGGCGTTACAGCATTAACAGACGAACAGCTTTTAGACGCTGTTCAAAAACAAACTTTTAAATACTTCT GGGATTATGCAGAACCAAATTCTGGATTAGCCAGAGAGCGTTACCATCCAGACGGAAATTATCCTGAAAATGATTCAAAT ATCGTTACAACAGGAGGTTCAGGTTTTGGATTAATGGCTCTTGTATCAGGAATGTCTCAAGGATATATTACTAAAGAGCA AGGTGTAGAACGTCTTAATAAAATTGCAGATTTTTTAGGCAAAGCAGATCGTTTTCACGGAGCATGGTCACATTGGATTG ACGGAAATACAGGAAAAGTAAAACCTTTTGGAACCAAGGATAATGGCGGCGATTTAGTCGAAACTTCATTTTTGGTTGCA GGAATGATTACAGTTCGTGAATATCTTAAAGATGGTTCTGAAAAAGAAAAAGCTGTAGCACAAAAATTTGATGCACTTTG GAAAGGTGTTGACTGGCAATGGTATACAAACAACAAAAATGTGTTGTACTGGCACTGGTCACCAAACTACGCATGGCAGA TGAATTTTCCTCTTCAAGGATATAACGAATGTCTGATCACTTACGTAATGGCAGCATCTTCACCAACTCATACAATCGAT GCAAAGGCATATCATGAAGGATGGGCGAGAAGCGGAGGCATAGTTTCTTCAAAAACAAAATACAATATTCCGCTTATTTT AAAGCACAATGGTGCTGAAGAATTTGGAGGTCCGTTATTCTGGGCACATTATTCTTATGTAGGTTTAGATCCAAATCAGT TAACAGATAAATATGCAAACTACTGGGATTTAAATGTAAACCAAACCAAAATCAATTATCAGTTTTGCGTTCAAAATCCA AATAAAAATGCAGGTTATGGACCAGATTATTGGGGTTTAACAGCATCATATTCAAGAAACCCTGATGGTTCTATTGGATA TAATGCACACATGCCGAGCAACGATCAAGGTGTGATTTCACCTACTGCAGCAATCAGTTCAATCGTGTACACACCAAAAG AATCGATGGCTTTAATCAGAAACTTATATGATAATCATAAAGATGAAACATGGGGAGATGCAGGTTTTTATGATGCACTG AGTTTAGGAAACAAATGGGCTGCAAAACGTTATCTGGCAATTGATCAAGGTCCTGAGGTGGTTATGATTGAAAATTACAG AACAGGTTTATTATGGAAATTATTCATGAATGCACCTGAAGTAAAACAAGGATTAACAAAACTTGGATTCAAATCTGGTA AATACGGAATTTAA
Upstream 100 bases:
>100_bases AACTCAAAACCCAGGCGGTTATTAATCAAAATCTTATATCACTTTCTCCAGAATCATCCTGGAGGAAGTGATTATTTATT ACAATCTCAAAATCTTTATA
Downstream 100 bases:
>100_bases GCTTCTATGAAAAATACATTAGCATTTTTATTTCTGTTACTTTCTATCGTTGTTTTTGGGCAGACCGAAACAACAGGGAA AATCAATACAGTTATAATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 457; Mature: 457
Protein sequence:
>457_residues MIRISVLFLAFAFFSCGSNDKSKENAQENTSGVTALTDEQLLDAVQKQTFKYFWDYAEPNSGLARERYHPDGNYPENDSN IVTTGGSGFGLMALVSGMSQGYITKEQGVERLNKIADFLGKADRFHGAWSHWIDGNTGKVKPFGTKDNGGDLVETSFLVA GMITVREYLKDGSEKEKAVAQKFDALWKGVDWQWYTNNKNVLYWHWSPNYAWQMNFPLQGYNECLITYVMAASSPTHTID AKAYHEGWARSGGIVSSKTKYNIPLILKHNGAEEFGGPLFWAHYSYVGLDPNQLTDKYANYWDLNVNQTKINYQFCVQNP NKNAGYGPDYWGLTASYSRNPDGSIGYNAHMPSNDQGVISPTAAISSIVYTPKESMALIRNLYDNHKDETWGDAGFYDAL SLGNKWAAKRYLAIDQGPEVVMIENYRTGLLWKLFMNAPEVKQGLTKLGFKSGKYGI
Sequences:
>Translated_457_residues MIRISVLFLAFAFFSCGSNDKSKENAQENTSGVTALTDEQLLDAVQKQTFKYFWDYAEPNSGLARERYHPDGNYPENDSN IVTTGGSGFGLMALVSGMSQGYITKEQGVERLNKIADFLGKADRFHGAWSHWIDGNTGKVKPFGTKDNGGDLVETSFLVA GMITVREYLKDGSEKEKAVAQKFDALWKGVDWQWYTNNKNVLYWHWSPNYAWQMNFPLQGYNECLITYVMAASSPTHTID AKAYHEGWARSGGIVSSKTKYNIPLILKHNGAEEFGGPLFWAHYSYVGLDPNQLTDKYANYWDLNVNQTKINYQFCVQNP NKNAGYGPDYWGLTASYSRNPDGSIGYNAHMPSNDQGVISPTAAISSIVYTPKESMALIRNLYDNHKDETWGDAGFYDAL SLGNKWAAKRYLAIDQGPEVVMIENYRTGLLWKLFMNAPEVKQGLTKLGFKSGKYGI >Mature_457_residues MIRISVLFLAFAFFSCGSNDKSKENAQENTSGVTALTDEQLLDAVQKQTFKYFWDYAEPNSGLARERYHPDGNYPENDSN IVTTGGSGFGLMALVSGMSQGYITKEQGVERLNKIADFLGKADRFHGAWSHWIDGNTGKVKPFGTKDNGGDLVETSFLVA GMITVREYLKDGSEKEKAVAQKFDALWKGVDWQWYTNNKNVLYWHWSPNYAWQMNFPLQGYNECLITYVMAASSPTHTID AKAYHEGWARSGGIVSSKTKYNIPLILKHNGAEEFGGPLFWAHYSYVGLDPNQLTDKYANYWDLNVNQTKINYQFCVQNP NKNAGYGPDYWGLTASYSRNPDGSIGYNAHMPSNDQGVISPTAAISSIVYTPKESMALIRNLYDNHKDETWGDAGFYDAL SLGNKWAAKRYLAIDQGPEVVMIENYRTGLLWKLFMNAPEVKQGLTKLGFKSGKYGI
Specific function: Unknown
COG id: COG5368
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51297; Mature: 51297
Theoretical pI: Translated: 6.68; Mature: 6.68
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIRISVLFLAFAFFSCGSNDKSKENAQENTSGVTALTDEQLLDAVQKQTFKYFWDYAEPN CEEEHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCC SGLARERYHPDGNYPENDSNIVTTGGSGFGLMALVSGMSQGYITKEQGVERLNKIADFLG CCCHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHH KADRFHGAWSHWIDGNTGKVKPFGTKDNGGDLVETSFLVAGMITVREYLKDGSEKEKAVA CHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH QKFDALWKGVDWQWYTNNKNVLYWHWSPNYAWQMNFPLQGYNECLITYVMAASSPTHTID HHHHHHHCCCCEEEEECCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEC AKAYHEGWARSGGIVSSKTKYNIPLILKHNGAEEFGGPLFWAHYSYVGLDPNQLTDKYAN CHHHHHHHCCCCCEEECCCCCCCEEEEECCCCHHHCCCEEEEEEEEECCCHHHHHHHHCC YWDLNVNQTKINYQFCVQNPNKNAGYGPDYWGLTASYSRNPDGSIGYNAHMPSNDQGVIS EEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC PTAAISSIVYTPKESMALIRNLYDNHKDETWGDAGFYDALSLGNKWAAKRYLAIDQGPEV HHHHHHHHEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHCEEEEECCCCCE VMIENYRTGLLWKLFMNAPEVKQGLTKLGFKSGKYGI EEECCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MIRISVLFLAFAFFSCGSNDKSKENAQENTSGVTALTDEQLLDAVQKQTFKYFWDYAEPN CEEEHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHCCCCCC SGLARERYHPDGNYPENDSNIVTTGGSGFGLMALVSGMSQGYITKEQGVERLNKIADFLG CCCHHHCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHH KADRFHGAWSHWIDGNTGKVKPFGTKDNGGDLVETSFLVAGMITVREYLKDGSEKEKAVA CHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH QKFDALWKGVDWQWYTNNKNVLYWHWSPNYAWQMNFPLQGYNECLITYVMAASSPTHTID HHHHHHHCCCCEEEEECCCEEEEEEECCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEC AKAYHEGWARSGGIVSSKTKYNIPLILKHNGAEEFGGPLFWAHYSYVGLDPNQLTDKYAN CHHHHHHHCCCCCEEECCCCCCCEEEEECCCCHHHCCCEEEEEEEEECCCHHHHHHHHCC YWDLNVNQTKINYQFCVQNPNKNAGYGPDYWGLTASYSRNPDGSIGYNAHMPSNDQGVIS EEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC PTAAISSIVYTPKESMALIRNLYDNHKDETWGDAGFYDALSLGNKWAAKRYLAIDQGPEV HHHHHHHHEECCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCHHHHCEEEEECCCCCE VMIENYRTGLLWKLFMNAPEVKQGLTKLGFKSGKYGI EEECCCCCCHHHHHHCCCCHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA