Click here to switch to the map view.

The map label for this gene is ydjQ [C]

Identifier: 146301193

GI number: 146301193

Start: 4117274

End: 4118635

Strand: Direct

Name: ydjQ [C]

Synonym: Fjoh_3451

Alternate gene names: 146301193

Gene position: 4117274-4118635 (Clockwise)

Preceding gene: 146301192

Following gene: 146301194

Centisome position: 67.53

GC content: 35.24

Gene sequence:

>1362_bases
ATGTACGCAATACTAGACATAGAAACCACTGGGGGACAATTTAATGAAGAGGGAATTACTGAAATCGCTATCTACAAATT
TGATGGGCATGAAGTAGTTGATCAATTCATCAGCCTTGTCAATCCTGAAATTCCCATTCAGCCTTTCGTAGTAAAACTGA
CCGGAATTAATAATGCTATGTTACGTTCTGCACCAAAATTCTACGAAGTTGCTAAACGAATTATAGAAATTACTACAGAT
TGCGTTATTGTCGCTCATAATGCTTCTTTTGACTATAGAATCCTGAGAACCGAATTTCGTCGTTTGGGTTATGATTTCGA
AGCCAAAACGCTTTGCACAGTAGAATTAGCCAAAAAACTAATTCCAGAACAGCCTTCATACAGCTTAGGAAAACTGGTTC
GCGCACTTGGAATCCCTATGGCCGACAGACACCGTGCAAGCGGAGACGCTATGGCAACCACAAAGCTGTTTAAAATGCTT
TTGGAAAAAGATGTCGAAAAAACCATCGTAAAAGATTTTATAAAGCTGGAAGTAGAAAAAGGAATTTCTCCAAAATTCTT
GGATATTGTAAATCAAATGCCTGCTAAAACTGGTGTTTACTATATTTATAAAGAAGACGGAACTTTAATTTACATTGGCA
AAAGCCAAAATATCAAAAAAAGAGTCAATCAGCATTTTACCGGAATTACAACCAAAAGCAAAAGAATCCAGGCAGAAGTT
TTTACCATAACGTATGATGAAACCGGAAGCGAATTAATCGCGCTTTTAAAAGAAAGCCAGGAAGTAAAAGTTAATCGTCC
ACGATACAATCGTTCGCAGAAAAAATCTGTATTTCCTGTAGCTTTATATGCCGAAAAAGATTCAAACGGTTATATCAACT
TAAGACTGGAAAAAGCTGACGGACGTAAAAAAGAAATTACCTCTTTTGCTTCGTTACAAGAAGGAAAAAATGCACTTTTC
AGATTTACGTCAAAATACCATTTGTGCCAAAAACTTACAGGTTTATATCAAACCAAAAAAGAGTGTTTTCAATATAAAAT
CAAAGAATGTGACGGCGCCTGCATCGGCGAAGTTACGCCAGAAGTTTACAATTTAAGAGTACAGCAATTCATTTCAGAAA
ACAGCTTTGAAAACAAAAGCATAGTATTGATAGACAGAGGTAGAAATGTAAACGAACGAAGTGCAATTCTAATTGAAAAC
GGAATATACAAAGGTTACGCCTATTACGATCTTAATTATCAAATTACGAATATCGACATCTTAAAAAATATTCTGGTCCC
AATGCAGCATAACCGCGATGTAAAAAATATCATTCAGAGTTATATCCGCAAAAGCAAATCAATAAAAATACTTCAATTTT
AA

Upstream 100 bases:

>100_bases
TTCAATACCAATGACAATGGCAATTACAATAACAATTTTCAAAATTGATATTGAGTTTTGATATTGTAATTGCCATTGAT
TTTTGACATTGACATTGAAT

Downstream 100 bases:

>100_bases
CAAATCGAAACCTTCATTATCTTTAAGGATATGAAAAATATAAAATCACAATACGAAATCTTTAGAGAAAAAGTCAAAAT
TGTTCTATACGGCACCAACA

Product: DNA polymerase III subunit epsilon

Products: diphosphate; DNAn+1

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MYAILDIETTGGQFNEEGITEIAIYKFDGHEVVDQFISLVNPEIPIQPFVVKLTGINNAMLRSAPKFYEVAKRIIEITTD
CVIVAHNASFDYRILRTEFRRLGYDFEAKTLCTVELAKKLIPEQPSYSLGKLVRALGIPMADRHRASGDAMATTKLFKML
LEKDVEKTIVKDFIKLEVEKGISPKFLDIVNQMPAKTGVYYIYKEDGTLIYIGKSQNIKKRVNQHFTGITTKSKRIQAEV
FTITYDETGSELIALLKESQEVKVNRPRYNRSQKKSVFPVALYAEKDSNGYINLRLEKADGRKKEITSFASLQEGKNALF
RFTSKYHLCQKLTGLYQTKKECFQYKIKECDGACIGEVTPEVYNLRVQQFISENSFENKSIVLIDRGRNVNERSAILIEN
GIYKGYAYYDLNYQITNIDILKNILVPMQHNRDVKNIIQSYIRKSKSIKILQF

Sequences:

>Translated_453_residues
MYAILDIETTGGQFNEEGITEIAIYKFDGHEVVDQFISLVNPEIPIQPFVVKLTGINNAMLRSAPKFYEVAKRIIEITTD
CVIVAHNASFDYRILRTEFRRLGYDFEAKTLCTVELAKKLIPEQPSYSLGKLVRALGIPMADRHRASGDAMATTKLFKML
LEKDVEKTIVKDFIKLEVEKGISPKFLDIVNQMPAKTGVYYIYKEDGTLIYIGKSQNIKKRVNQHFTGITTKSKRIQAEV
FTITYDETGSELIALLKESQEVKVNRPRYNRSQKKSVFPVALYAEKDSNGYINLRLEKADGRKKEITSFASLQEGKNALF
RFTSKYHLCQKLTGLYQTKKECFQYKIKECDGACIGEVTPEVYNLRVQQFISENSFENKSIVLIDRGRNVNERSAILIEN
GIYKGYAYYDLNYQITNIDILKNILVPMQHNRDVKNIIQSYIRKSKSIKILQF
>Mature_453_residues
MYAILDIETTGGQFNEEGITEIAIYKFDGHEVVDQFISLVNPEIPIQPFVVKLTGINNAMLRSAPKFYEVAKRIIEITTD
CVIVAHNASFDYRILRTEFRRLGYDFEAKTLCTVELAKKLIPEQPSYSLGKLVRALGIPMADRHRASGDAMATTKLFKML
LEKDVEKTIVKDFIKLEVEKGISPKFLDIVNQMPAKTGVYYIYKEDGTLIYIGKSQNIKKRVNQHFTGITTKSKRIQAEV
FTITYDETGSELIALLKESQEVKVNRPRYNRSQKKSVFPVALYAEKDSNGYINLRLEKADGRKKEITSFASLQEGKNALF
RFTSKYHLCQKLTGLYQTKKECFQYKIKECDGACIGEVTPEVYNLRVQQFISENSFENKSIVLIDRGRNVNERSAILIEN
GIYKGYAYYDLNYQITNIDILKNILVPMQHNRDVKNIIQSYIRKSKSIKILQF

Specific function: Unknown

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788037, Length=190, Percent_Identity=27.8947368421053, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081999, Length=190, Percent_Identity=27.3684210526316, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337
- InterPro:   IPR000305 [H]

Pfam domain/function: PF00929 Exonuc_X-T; PF01541 GIY-YIG [H]

EC number: 2.7.7.7

Molecular weight: Translated: 52034; Mature: 52034

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: PS50164 UVRC_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYAILDIETTGGQFNEEGITEIAIYKFDGHEVVDQFISLVNPEIPIQPFVVKLTGINNAM
CEEEEEEECCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH
LRSAPKFYEVAKRIIEITTDCVIVAHNASFDYRILRTEFRRLGYDFEAKTLCTVELAKKL
HHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHH
IPEQPSYSLGKLVRALGIPMADRHRASGDAMATTKLFKMLLEKDVEKTIVKDFIKLEVEK
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GISPKFLDIVNQMPAKTGVYYIYKEDGTLIYIGKSQNIKKRVNQHFTGITTKSKRIQAEV
CCCHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEE
FTITYDETGSELIALLKESQEVKVNRPRYNRSQKKSVFPVALYAEKDSNGYINLRLEKAD
EEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCC
GRKKEITSFASLQEGKNALFRFTSKYHLCQKLTGLYQTKKECFQYKIKECDGACIGEVTP
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCH
EVYNLRVQQFISENSFENKSIVLIDRGRNVNERSAILIENGIYKGYAYYDLNYQITNIDI
HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEEEEECHHH
LKNILVPMQHNRDVKNIIQSYIRKSKSIKILQF
HHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEC
>Mature Secondary Structure
MYAILDIETTGGQFNEEGITEIAIYKFDGHEVVDQFISLVNPEIPIQPFVVKLTGINNAM
CEEEEEEECCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHCCCCCCCEEEEEEECCCHHH
LRSAPKFYEVAKRIIEITTDCVIVAHNASFDYRILRTEFRRLGYDFEAKTLCTVELAKKL
HHCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEHHHHHHHHH
IPEQPSYSLGKLVRALGIPMADRHRASGDAMATTKLFKMLLEKDVEKTIVKDFIKLEVEK
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GISPKFLDIVNQMPAKTGVYYIYKEDGTLIYIGKSQNIKKRVNQHFTGITTKSKRIQAEV
CCCHHHHHHHHHCCCCCCEEEEEECCCEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEE
FTITYDETGSELIALLKESQEVKVNRPRYNRSQKKSVFPVALYAEKDSNGYINLRLEKAD
EEEEECCCHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCC
GRKKEITSFASLQEGKNALFRFTSKYHLCQKLTGLYQTKKECFQYKIKECDGACIGEVTP
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCH
EVYNLRVQQFISENSFENKSIVLIDRGRNVNERSAILIENGIYKGYAYYDLNYQITNIDI
HHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCEEEEEEEEEEECHHH
LKNILVPMQHNRDVKNIIQSYIRKSKSIKILQF
HHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxynucleoside triphosphate; DNAn

Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]