Click here to switch to the map view.

The map label for this gene is yrbE [H]

Identifier: 146301189

GI number: 146301189

Start: 4114148

End: 4115113

Strand: Direct

Name: yrbE [H]

Synonym: Fjoh_3447

Alternate gene names: 146301189

Gene position: 4114148-4115113 (Clockwise)

Preceding gene: 146301187

Following gene: 146301190

Centisome position: 67.48

GC content: 34.78

Gene sequence:

>966_bases
ATGTTAAAAGTAGGAGTTTTAGGTGCTGGTCATCTTGGTAAAATACATTTACGCTTATTACAACAATCTGACAAATACGA
ATTAGTTGGATTTTACGACGAAAATCAAGAAAATGCCGAAAGAATCTCAAAAGAGTTTGGCTATAAAAATTTCAGCACAA
TTGCCAAACTTATTCACGCTGTCGACGTGATTGACATTGTTACTCCTACACTTTCACATTACAAATGTGCAAAAGTTGCC
ATAAAATCAGGAAAACATATCTTTATAGAAAAACCAATTGCCAATACAGTTGAAGAAGCTGAAGAAATTATTGCTTTAGC
TAAAGAACACAACGTAAAAGGACAAGTAGGTCATGTTGAGCGTTTTAATCCTGCTTTTATCGCTACAAAAGAAATGATCG
AAAATCCGATGTTTATAGAAACACATCGTTTGGCAGAATTTAATCCGCGTGGTACCGATGTTCCTGTGGTTTTAGATTTA
ATGATACATGATATCGACGCTATTTTGAGCGTTGTAAAATCTAAAGTAAAAAGCATCAATGCAAGCGGTGTTTCAGTTAT
CAGTGAAACTCCGGATATTGCCAACGCCAGAATCGAATTTGAAAATGGCTGCGTTGCCAACTTAACAGCAAGCCGAATTT
CGTTGAAAAACATGCGTAAATCACGTTTTTTTCAAAAAGATGCTTACATTTCTGTTGACTTTTTAGAGAAAAAATGCGAA
GTAGTTCGTATGAAAGACGCACCAGAAGTCCCTGGAGATTTTGATATGATTTTGCAGAATGCAGAAGGTGTAAAAAAACA
AATTTATTTCACGAATCCAGATGTTGAACAAAACAATGCGATCTTAGATGAATTAAATTCATTTGCAGATGCAATTAACA
ATAATACAACTCCAGTTGTAACACTTGAACAGGCAACAGATGCATTGCGCGTTGCTTATCAAATTATTGATTGTTTCGAT
AAATAG

Upstream 100 bases:

>100_bases
ACAGCAAATAATTTACAATTCACAATTCATAACTCACAATTAGATGAATTCATTTTCACGTTAAACAAATAAATTATATT
TTTGTTTAAAATACATTCTC

Downstream 100 bases:

>100_bases
TTTTAAAAAAATCAAAATAAATTAGCCACGAATTCACGAATTATTTGGTGAATTCGTGGCTAAATCATAAAAAAATATCT
AGCAAAAAATGAAAACAATA

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MLKVGVLGAGHLGKIHLRLLQQSDKYELVGFYDENQENAERISKEFGYKNFSTIAKLIHAVDVIDIVTPTLSHYKCAKVA
IKSGKHIFIEKPIANTVEEAEEIIALAKEHNVKGQVGHVERFNPAFIATKEMIENPMFIETHRLAEFNPRGTDVPVVLDL
MIHDIDAILSVVKSKVKSINASGVSVISETPDIANARIEFENGCVANLTASRISLKNMRKSRFFQKDAYISVDFLEKKCE
VVRMKDAPEVPGDFDMILQNAEGVKKQIYFTNPDVEQNNAILDELNSFADAINNNTTPVVTLEQATDALRVAYQIIDCFD
K

Sequences:

>Translated_321_residues
MLKVGVLGAGHLGKIHLRLLQQSDKYELVGFYDENQENAERISKEFGYKNFSTIAKLIHAVDVIDIVTPTLSHYKCAKVA
IKSGKHIFIEKPIANTVEEAEEIIALAKEHNVKGQVGHVERFNPAFIATKEMIENPMFIETHRLAEFNPRGTDVPVVLDL
MIHDIDAILSVVKSKVKSINASGVSVISETPDIANARIEFENGCVANLTASRISLKNMRKSRFFQKDAYISVDFLEKKCE
VVRMKDAPEVPGDFDMILQNAEGVKKQIYFTNPDVEQNNAILDELNSFADAINNNTTPVVTLEQATDALRVAYQIIDCFD
K
>Mature_321_residues
MLKVGVLGAGHLGKIHLRLLQQSDKYELVGFYDENQENAERISKEFGYKNFSTIAKLIHAVDVIDIVTPTLSHYKCAKVA
IKSGKHIFIEKPIANTVEEAEEIIALAKEHNVKGQVGHVERFNPAFIATKEMIENPMFIETHRLAEFNPRGTDVPVVLDL
MIHDIDAILSVVKSKVKSINASGVSVISETPDIANARIEFENGCVANLTASRISLKNMRKSRFFQKDAYISVDFLEKKCE
VVRMKDAPEVPGDFDMILQNAEGVKKQIYFTNPDVEQNNAILDELNSFADAINNNTTPVVTLEQATDALRVAYQIIDCFD
K

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87082405, Length=124, Percent_Identity=32.258064516129, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35893; Mature: 35893

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKVGVLGAGHLGKIHLRLLQQSDKYELVGFYDENQENAERISKEFGYKNFSTIAKLIHA
CEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHH
VDVIDIVTPTLSHYKCAKVAIKSGKHIFIEKPIANTVEEAEEIIALAKEHNVKGQVGHVE
HHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RFNPAFIATKEMIENPMFIETHRLAEFNPRGTDVPVVLDLMIHDIDAILSVVKSKVKSIN
CCCCHHEEEHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
ASGVSVISETPDIANARIEFENGCVANLTASRISLKNMRKSRFFQKDAYISVDFLEKKCE
CCCCEEECCCCCCCCCEEEECCCEEEECHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHH
VVRMKDAPEVPGDFDMILQNAEGVKKQIYFTNPDVEQNNAILDELNSFADAINNNTTPVV
EEEECCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
TLEQATDALRVAYQIIDCFDK
EEHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLKVGVLGAGHLGKIHLRLLQQSDKYELVGFYDENQENAERISKEFGYKNFSTIAKLIHA
CEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHH
VDVIDIVTPTLSHYKCAKVAIKSGKHIFIEKPIANTVEEAEEIIALAKEHNVKGQVGHVE
HHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
RFNPAFIATKEMIENPMFIETHRLAEFNPRGTDVPVVLDLMIHDIDAILSVVKSKVKSIN
CCCCHHEEEHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
ASGVSVISETPDIANARIEFENGCVANLTASRISLKNMRKSRFFQKDAYISVDFLEKKCE
CCCCEEECCCCCCCCCEEEECCCEEEECHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHH
VVRMKDAPEVPGDFDMILQNAEGVKKQIYFTNPDVEQNNAILDELNSFADAINNNTTPVV
EEEECCCCCCCCCHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEE
TLEQATDALRVAYQIIDCFDK
EEHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]