Click here to switch to the map view.

The map label for this gene is oprF [H]

Identifier: 146301157

GI number: 146301157

Start: 4080687

End: 4081949

Strand: Direct

Name: oprF [H]

Synonym: Fjoh_3415

Alternate gene names: 146301157

Gene position: 4080687-4081949 (Clockwise)

Preceding gene: 146301156

Following gene: 146301165

Centisome position: 66.93

GC content: 35.79

Gene sequence:

>1263_bases
ATGAAAAAGAAATTAGCATCAGTATCCCTTTTACTATTAGCACTTACAGCAGGTGCTCAAAATATGGCTACCACATCAGC
AAAACCAAGTGTTGACCAACCAGAATACAATAAATGGTCTATCGAACTTAATGGTGGTGTTAATAAACCAACCCGTGCAA
TGACTGCAGGTTATACTACAGAATCTTTAAATTTCTTTCACGGTGATTTAGGTGTAAGATATATGTTTAATCCTAAGTTT
GGGGTAAAATTAGATGTAGGTTACGACCAGTTTAAAGAAAAGAAAAACACACCTGATTTTGAAAGCCGCTATGTTAGAGC
CAGTTTTCAGGGGGTTGTTAACGTAGGACGTGCTTTAAATTTTGAAACCTGGACAAATACAATTGGTATTTTGGCACATG
GTGGTTTTGGGGTTTCGCAAATTAGTACTGAAACTGGATTTGGAGGGCAGGATTATATGGCTCACGGAATCGCAGGTATT
ACAGGACAAATCAAACTTAGTAACAGAGTTGCTTTGACTGGTGACCTTACAGGAATTGTGAATGGAAGACAAAACTGGAA
TTTTGACGGTATGGGTAATACTACTACAGGTTCTTTTGATGGTGTATTATTAAACGCTTCTGTTGGTTTAACTTTTTACT
TAGGTAAAAACGAAAAACATGCTGACTGGGTTGGCGAAGAAGACAGAATTGGTGAATTGGAAAAAAGAGTGGACTTAATC
GAAACTGGTCTTATCGATTCAGACAAAGACGGAGTTGCTGATTTATACGATTTAGAGCCTAATACAATTGCAGGAGTTGC
TGTTAATACAAAAGGACAATCTATTGATACAAATCAAAATGGTGTGCCGGATGAGCTAGAAAGCTATTTAGATAAAACTT
ACGAAAAGAAAGGCAGCGGAACTGCTACAAACAATACAGTTGAAGAGTTAATTAACGGTGGTTATGTAAATGTTTATTTT
GATTTCAATTCATCTAAACCTACAAATGCTTCTTTATCTGGTGTTGATTTCTTAGTGAAATATTTGAAAAATAATCCAGG
AAAATCTGCTGACATTATTGGTTATGCTGACGAAATTGGAAAAACAAGTTACAATACTGAATTATCAAGAAAAAGAGCTG
AAGCAGTGAAAAAAGTAGCTGTAAACGCTGGAATCGATGCTTCAAGATTGAATGTAATTGCTAACGGAGAAGATACTTCG
GTTAACAAAAACTCTAAAGAAGCACGTCAAATCGTGAGAAGAGTTACTTTCCAAGTAAAATAA

Upstream 100 bases:

>100_bases
AATTAGTGGGAATTATGTAAGAGCATATAGAACATTGTCTTAAACATGAGCCATAATTTTGTCTGGAGTTTAAATAAAAA
CCCAATTAAATTTTGATATC

Downstream 100 bases:

>100_bases
TCTTAGTCTATATATTTAAAAAGGCGGTTTCAATAATTTTGAAACCGCCTTTTTGTTTAATAATATAACAGACAATAGAT
TTCTTTCTAGTTAATGAATA

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MKKKLASVSLLLLALTAGAQNMATTSAKPSVDQPEYNKWSIELNGGVNKPTRAMTAGYTTESLNFFHGDLGVRYMFNPKF
GVKLDVGYDQFKEKKNTPDFESRYVRASFQGVVNVGRALNFETWTNTIGILAHGGFGVSQISTETGFGGQDYMAHGIAGI
TGQIKLSNRVALTGDLTGIVNGRQNWNFDGMGNTTTGSFDGVLLNASVGLTFYLGKNEKHADWVGEEDRIGELEKRVDLI
ETGLIDSDKDGVADLYDLEPNTIAGVAVNTKGQSIDTNQNGVPDELESYLDKTYEKKGSGTATNNTVEELINGGYVNVYF
DFNSSKPTNASLSGVDFLVKYLKNNPGKSADIIGYADEIGKTSYNTELSRKRAEAVKKVAVNAGIDASRLNVIANGEDTS
VNKNSKEARQIVRRVTFQVK

Sequences:

>Translated_420_residues
MKKKLASVSLLLLALTAGAQNMATTSAKPSVDQPEYNKWSIELNGGVNKPTRAMTAGYTTESLNFFHGDLGVRYMFNPKF
GVKLDVGYDQFKEKKNTPDFESRYVRASFQGVVNVGRALNFETWTNTIGILAHGGFGVSQISTETGFGGQDYMAHGIAGI
TGQIKLSNRVALTGDLTGIVNGRQNWNFDGMGNTTTGSFDGVLLNASVGLTFYLGKNEKHADWVGEEDRIGELEKRVDLI
ETGLIDSDKDGVADLYDLEPNTIAGVAVNTKGQSIDTNQNGVPDELESYLDKTYEKKGSGTATNNTVEELINGGYVNVYF
DFNSSKPTNASLSGVDFLVKYLKNNPGKSADIIGYADEIGKTSYNTELSRKRAEAVKKVAVNAGIDASRLNVIANGEDTS
VNKNSKEARQIVRRVTFQVK
>Mature_420_residues
MKKKLASVSLLLLALTAGAQNMATTSAKPSVDQPEYNKWSIELNGGVNKPTRAMTAGYTTESLNFFHGDLGVRYMFNPKF
GVKLDVGYDQFKEKKNTPDFESRYVRASFQGVVNVGRALNFETWTNTIGILAHGGFGVSQISTETGFGGQDYMAHGIAGI
TGQIKLSNRVALTGDLTGIVNGRQNWNFDGMGNTTTGSFDGVLLNASVGLTFYLGKNEKHADWVGEEDRIGELEKRVDLI
ETGLIDSDKDGVADLYDLEPNTIAGVAVNTKGQSIDTNQNGVPDELESYLDKTYEKKGSGTATNNTVEELINGGYVNVYF
DFNSSKPTNASLSGVDFLVKYLKNNPGKSADIIGYADEIGKTSYNTELSRKRAEAVKKVAVNAGIDASRLNVIANGEDTS
VNKNSKEARQIVRRVTFQVK

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 45560; Mature: 45560

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKLASVSLLLLALTAGAQNMATTSAKPSVDQPEYNKWSIELNGGVNKPTRAMTAGYTT
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHEECCCCC
ESLNFFHGDLGVRYMFNPKFGVKLDVGYDQFKEKKNTPDFESRYVRASFQGVVNVGRALN
CCCEEEECCCCEEEEECCCCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
FETWTNTIGILAHGGFGVSQISTETGFGGQDYMAHGIAGITGQIKLSNRVALTGDLTGIV
CHHHCCEEEEEEECCCCHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEEECEEEEE
NGRQNWNFDGMGNTTTGSFDGVLLNASVGLTFYLGKNEKHADWVGEEDRIGELEKRVDLI
CCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
ETGLIDSDKDGVADLYDLEPNTIAGVAVNTKGQSIDTNQNGVPDELESYLDKTYEKKGSG
HHCCCCCCCCCCCEEEECCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHCCCC
TATNNTVEELINGGYVNVYFDFNSSKPTNASLSGVDFLVKYLKNNPGKSADIIGYADEIG
CCCCHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHC
KTSYNTELSRKRAEAVKKVAVNAGIDASRLNVIANGEDTSVNKNSKEARQIVRRVTFQVK
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKKLASVSLLLLALTAGAQNMATTSAKPSVDQPEYNKWSIELNGGVNKPTRAMTAGYTT
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHEECCCCC
ESLNFFHGDLGVRYMFNPKFGVKLDVGYDQFKEKKNTPDFESRYVRASFQGVVNVGRALN
CCCEEEECCCCEEEEECCCCCEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC
FETWTNTIGILAHGGFGVSQISTETGFGGQDYMAHGIAGITGQIKLSNRVALTGDLTGIV
CHHHCCEEEEEEECCCCHHHCCCCCCCCCHHHHHHHHCCCEEEEEECCEEEEEECEEEEE
NGRQNWNFDGMGNTTTGSFDGVLLNASVGLTFYLGKNEKHADWVGEEDRIGELEKRVDLI
CCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
ETGLIDSDKDGVADLYDLEPNTIAGVAVNTKGQSIDTNQNGVPDELESYLDKTYEKKGSG
HHCCCCCCCCCCCEEEECCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHHHHHHCCCC
TATNNTVEELINGGYVNVYFDFNSSKPTNASLSGVDFLVKYLKNNPGKSADIIGYADEIG
CCCCHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHHHC
KTSYNTELSRKRAEAVKKVAVNAGIDASRLNVIANGEDTSVNKNSKEARQIVRRVTFQVK
CCCCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]