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The map label for this gene is fecI [C]

Identifier: 146301079

GI number: 146301079

Start: 3985951

End: 3986550

Strand: Direct

Name: fecI [C]

Synonym: Fjoh_3335

Alternate gene names: 146301079

Gene position: 3985951-3986550 (Clockwise)

Preceding gene: 146301078

Following gene: 146301080

Centisome position: 65.38

GC content: 32.83

Gene sequence:

>600_bases
ATGAACAACAATACCAGTTTCGAATTAAATCTCTTCAAATCCTTTAAGGAAGGAGACGAAACTGCTTTCAAGTTTTTCTA
TGATAAATACTTTAGAAGAATTCAGTCTTTCAGCGTTCAGTTTATTTATGACCAGGAAGAAGCCGAGAATCTGGCTCAGG
AAGCTTTACTACACCTATGGCAGAATAGAGAAAGTGTAGAATCTATAAACGGAATTCAGGCCTTTTTGTTTACTTATGCC
AAATCTAAATGTTTGAATTTAATCCGCCATAATAAGGTGAAGGATAAATTTAAAAACGACTTACTTAACCACAAAGAAAG
AGAACTGGATATTGAGGTTTTAAATTCGCTTCAATTCGATACTTTAGAATTAACCGAATTAGAACGCATTATTCAGGAAT
CTATCAACGATTTGCCGCCCAAAACCAGGGAAGTTTTTATAAAAAAACGCTTCGAAAATAAAAAAAATGCAGAAATCGCC
GAAGAAATGGAAGTTACCTTAAAAGCCGTAGAAGCCCATATGACAAAGGCTTTGAAGATTTTAAAGACCAAATTATCGGA
TTATTTGTTCCTAATCTTTATCCTTATTTATAATAATTAA

Upstream 100 bases:

>100_bases
AATTAATATAAATAAACTTTTATATTTGCCGCTTTCCGGGCAAATATAAGTACTTTTTAAAATTTACTTAATATTGCTTT
TCCAAAATAAATTTTTATTA

Downstream 100 bases:

>100_bases
GAATAAAAGGTAGGGTTTTTTATTTCTGAAGTGTACTAACTATAGTGAGACGTTTTAATACTCAAATATGACATCGGAAA
TAATACAAAAATATCTTTCT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; ECF-Type RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; ECF Sigma Factor; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma Factor Sigma-70 Family; Sigma Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma-H Factor

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MNNNTSFELNLFKSFKEGDETAFKFFYDKYFRRIQSFSVQFIYDQEEAENLAQEALLHLWQNRESVESINGIQAFLFTYA
KSKCLNLIRHNKVKDKFKNDLLNHKERELDIEVLNSLQFDTLELTELERIIQESINDLPPKTREVFIKKRFENKKNAEIA
EEMEVTLKAVEAHMTKALKILKTKLSDYLFLIFILIYNN

Sequences:

>Translated_199_residues
MNNNTSFELNLFKSFKEGDETAFKFFYDKYFRRIQSFSVQFIYDQEEAENLAQEALLHLWQNRESVESINGIQAFLFTYA
KSKCLNLIRHNKVKDKFKNDLLNHKERELDIEVLNSLQFDTLELTELERIIQESINDLPPKTREVFIKKRFENKKNAEIA
EEMEVTLKAVEAHMTKALKILKTKLSDYLFLIFILIYNN
>Mature_199_residues
MNNNTSFELNLFKSFKEGDETAFKFFYDKYFRRIQSFSVQFIYDQEEAENLAQEALLHLWQNRESVESINGIQAFLFTYA
KSKCLNLIRHNKVKDKFKNDLLNHKERELDIEVLNSLQFDTLELTELERIIQESINDLPPKTREVFIKKRFENKKNAEIA
EEMEVTLKAVEAHMTKALKILKTKLSDYLFLIFILIYNN

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23733; Mature: 23733

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNNTSFELNLFKSFKEGDETAFKFFYDKYFRRIQSFSVQFIYDQEEAENLAQEALLHLW
CCCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHH
QNRESVESINGIQAFLFTYAKSKCLNLIRHNKVKDKFKNDLLNHKERELDIEVLNSLQFD
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
TLELTELERIIQESINDLPPKTREVFIKKRFENKKNAEIAEEMEVTLKAVEAHMTKALKI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKTKLSDYLFLIFILIYNN
HHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNNNTSFELNLFKSFKEGDETAFKFFYDKYFRRIQSFSVQFIYDQEEAENLAQEALLHLW
CCCCCCEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHHHHHHHH
QNRESVESINGIQAFLFTYAKSKCLNLIRHNKVKDKFKNDLLNHKERELDIEVLNSLQFD
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
TLELTELERIIQESINDLPPKTREVFIKKRFENKKNAEIAEEMEVTLKAVEAHMTKALKI
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKTKLSDYLFLIFILIYNN
HHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA