| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301045
Identifier: 146301045
GI number: 146301045
Start: 3943964
End: 3944854
Strand: Direct
Name: 146301045
Synonym: Fjoh_3301
Alternate gene names: NA
Gene position: 3943964-3944854 (Clockwise)
Preceding gene: 146301044
Following gene: 146301046
Centisome position: 64.69
GC content: 33.89
Gene sequence:
>891_bases ATGAATAAAAGGCAGATTTTACTGGTTTTACTTATCATTGGCACTGCCTTTTGGGGCATATCCTATTCTGTTACCAAATT AGCAATTGGAAATTTTTCGCCATCCACTTTTTTATTTTATCGCTTTTTAATGGCTGTAATGGTTCTAACTGTGATTTTCT GGAAATATGTTAGAAATACCAATTTAGAATCTATTAAAACCGGTGCAGTTTTGGCCGTTCCTATGTTTTTAGGAATTCAT TTGCAGACAGTTGGTTTAAAATATACCGATGCTTCTCAATGTTCTTTTATAGCCGGATTATGTGTTATTATAATTCCGTT GATAAAACTTAGCATTTACAAAACCAGTCCGCCTTTAAAAATCTGGATAGCTGCTTTAACAGCATTATCGGGATTATTTA TTATCGCTGTAAAAGACAAATTCACCATAAACCTGGGAGATCTATATACAATTGCCGGAGCCTTTGCTTTTGCAGTTTAT TTAATTTCTGTAGAAAAACATTCAGCTGCAAAAAACCTTTTAACGTCAATTGTACCCATGTTTGCATTTTGTGCTTTATT CACTTTCATTTTGGCACTTACAGATCAAAACGCAGATTGGTTTCCAGAAAGAAATACATTTTGGCTTGGAGTCGTTTATT GTGCATTATTTTCTACAGCATACATGTACACCATTTCAAATATATCACAACGCTATTTATCGGCAGAAAGAGTTGCGGTA ATTTATTTATTTGAACCTATTTTTGGTGCCATAGCCGCATTCTTTATTCTTGGCGAAAATCTTTCGCTTCGATTGCTTTT GGGAGGCAGTCTTATTTTTGCTGCGACTCTTATTTCCGAAGTAAACCTTAAAAACTCCAATTACAGATTAGGAATTAAAA AAACCTCTTAA
Upstream 100 bases:
>100_bases AGTTTTTATACCAAAAATGGTTTTGTACAATTTGACACCCATATTTTCAGACTGGGCGATGACGAACAAACCGATTTAAT GATGAAGAAAATTTTAATCA
Downstream 100 bases:
>100_bases TCCAATTCTTACATACTGATAATTATATAATTACAACTTTTAATAGTATAAGCACAATAAGCTTTTCTGAAATAACTTTG ATATACGATTCAATTTAATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 296
Protein sequence:
>296_residues MNKRQILLVLLIIGTAFWGISYSVTKLAIGNFSPSTFLFYRFLMAVMVLTVIFWKYVRNTNLESIKTGAVLAVPMFLGIH LQTVGLKYTDASQCSFIAGLCVIIIPLIKLSIYKTSPPLKIWIAALTALSGLFIIAVKDKFTINLGDLYTIAGAFAFAVY LISVEKHSAAKNLLTSIVPMFAFCALFTFILALTDQNADWFPERNTFWLGVVYCALFSTAYMYTISNISQRYLSAERVAV IYLFEPIFGAIAAFFILGENLSLRLLLGGSLIFAATLISEVNLKNSNYRLGIKKTS
Sequences:
>Translated_296_residues MNKRQILLVLLIIGTAFWGISYSVTKLAIGNFSPSTFLFYRFLMAVMVLTVIFWKYVRNTNLESIKTGAVLAVPMFLGIH LQTVGLKYTDASQCSFIAGLCVIIIPLIKLSIYKTSPPLKIWIAALTALSGLFIIAVKDKFTINLGDLYTIAGAFAFAVY LISVEKHSAAKNLLTSIVPMFAFCALFTFILALTDQNADWFPERNTFWLGVVYCALFSTAYMYTISNISQRYLSAERVAV IYLFEPIFGAIAAFFILGENLSLRLLLGGSLIFAATLISEVNLKNSNYRLGIKKTS >Mature_296_residues MNKRQILLVLLIIGTAFWGISYSVTKLAIGNFSPSTFLFYRFLMAVMVLTVIFWKYVRNTNLESIKTGAVLAVPMFLGIH LQTVGLKYTDASQCSFIAGLCVIIIPLIKLSIYKTSPPLKIWIAALTALSGLFIIAVKDKFTINLGDLYTIAGAFAFAVY LISVEKHSAAKNLLTSIVPMFAFCALFTFILALTDQNADWFPERNTFWLGVVYCALFSTAYMYTISNISQRYLSAERVAV IYLFEPIFGAIAAFFILGENLSLRLLLGGSLIFAATLISEVNLKNSNYRLGIKKTS
Specific function: Unknown
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 DUF6 domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32870; Mature: 32870
Theoretical pI: Translated: 9.85; Mature: 9.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKRQILLVLLIIGTAFWGISYSVTKLAIGNFSPSTFLFYRFLMAVMVLTVIFWKYVRNT CCCHHHHHHHHHHHHHHHCCCCEEHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC NLESIKTGAVLAVPMFLGIHLQTVGLKYTDASQCSFIAGLCVIIIPLIKLSIYKTSPPLK CHHHHHCCHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCHH IWIAALTALSGLFIIAVKDKFTINLGDLYTIAGAFAFAVYLISVEKHSAAKNLLTSIVPM HHHHHHHHHCCEEEEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAFCALFTFILALTDQNADWFPERNTFWLGVVYCALFSTAYMYTISNISQRYLSAERVAV HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE IYLFEPIFGAIAAFFILGENLSLRLLLGGSLIFAATLISEVNLKNSNYRLGIKKTS EEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEECC >Mature Secondary Structure MNKRQILLVLLIIGTAFWGISYSVTKLAIGNFSPSTFLFYRFLMAVMVLTVIFWKYVRNT CCCHHHHHHHHHHHHHHHCCCCEEHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC NLESIKTGAVLAVPMFLGIHLQTVGLKYTDASQCSFIAGLCVIIIPLIKLSIYKTSPPLK CHHHHHCCHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCHH IWIAALTALSGLFIIAVKDKFTINLGDLYTIAGAFAFAVYLISVEKHSAAKNLLTSIVPM HHHHHHHHHCCEEEEEEECEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAFCALFTFILALTDQNADWFPERNTFWLGVVYCALFSTAYMYTISNISQRYLSAERVAV HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE IYLFEPIFGAIAAFFILGENLSLRLLLGGSLIFAATLISEVNLKNSNYRLGIKKTS EEEHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]