| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is btuB [C]
Identifier: 146301032
GI number: 146301032
Start: 3929652
End: 3931844
Strand: Direct
Name: btuB [C]
Synonym: Fjoh_3288
Alternate gene names: 146301032
Gene position: 3929652-3931844 (Clockwise)
Preceding gene: 146301031
Following gene: 146301033
Centisome position: 64.45
GC content: 36.8
Gene sequence:
>2193_bases ATGATTGAAAATAAATCAAACAGCATATTGATTTTTGTGTTATTCTGCTTTGCTTTTTTGACACAAGTCCACTCTCAGAA CACCAATTCGGAAATAAAAGAACTTGAAGAAGTAGTGATTAAAGACCAGTCAGAAAAACGCGCCAAGAAAGAAGCATCAT TAAATACCGAAACGGTAAACAGCAATTTTATTCAGCGGAATCTCGGCGGAAGCCTGATGCAGTCCTTACAGCGAATTCCG GGAGTTAAAACCATTTCGATAGGTTCAGGAGGTTCAAAACCATTGATTCGCGGACTGAGTTTTAATCAGGTTATTGTAGT CGAAAACGGTATTAAACACGAAGGCCAGCAATGGGGCGCAGATCACGGGCTTGAAATCGATCAATATGCTGTTAATCGGG TGGAAATTATAAAAGGTCCTTTGTCATTTATTTATGGTTCTGATGCTATTGGCGGTGCAGTTAATATCAAACCTGTGCCC TTTCCTAAAAAAAATACTTTGGGCGGTAATGTAGATTTTACAGCCAAAAATAATAATGAACAAATTGGAAGTTCACTGAA TTTGTTTGGACGAAATGAAAACTGGTTTTTCGATACCAGAATTACATCACAGGATTATGGCGATTACAGGGTTCCAGCTG ATAAGGTTCAGGTTTACAATTATACAGTGCCCTTATACAAAAATCATTTGCGTAATACTGCTGGACGTGAACTGGATTTG CATGCCAGTACAGGATTTGTGGGCGAAAAGTTCAAATCGGTTTTGTATTTCAGTAATATACATACCAAAAGCGGCTTTTT TGCGAATGCACACGGACTTGAACCTCGTAATGTAAATCTTGAACTTCATGATAAATCGAGTCGTGATATTTTAATGCCTT TTCAGGAAGTTAATCATACTAAAATCAGTAATACAACTTCATTTGAAATAGGAAATCATCAGCTGCAGACACAATTGGGT TTTCAGAAGAATTTCCGCAGAGAATGGAGTCATTATGTAAATCATGGTTATATGCCGCCAATTTATCCTGCAGATATGTA TGCACCGCAGGATTTGGAAAGACAATACGACAAAGATGTTTTTTCGGTTTCTGTAAAAGATGGGTTTTCTGTTGACAGAC ATCAATTTACAGTTGGCTTAAACGGAGAAAAACAGCAAAATGAAATTAACGGCTGGAGTTTTCTAATTCCCGCTTTTAAT CAGCTGAATACAGGATTGTATGCCTATGATAAAATACAGCTGAATGATTTATGGATACTGCACGGAGCCGTGAGAATGGA TTATGGCCAAATCGAAATGAAACAACATACAGACTGGTTTAAAAGTGATGTGACACAAAACGGACAGACAACTCAGGAAT ATTTAAAACGATCTGAAGATTTAAACAAAACATTTAAAAGTTTTACATGGTCAGCAGGGATAAATTACAATCCGGGCAAG TTCTCGTTTAAAGCCAATGCAGGAACGAGTTTTAGAATGCCAATTGCGAAAGAATTAGCTTCAAATGGTGTCAATTATCA TTATTTCCGATTTGAAAAAGGAAATCCAAATCTTGATGCCGAGCGTTCGTATCAATTGGATCTTGGTATCGACTGGCAGG AAAGCAAATGGTCTGTGCAGCTGAGTCCGTTTTTTAATTATTTCCCAAATTTCATTTACCTAAACCCAACCTCACAACAT GATATTTATTATGGAGCAGGAAATCAGGTTTTTGAATATCAGCAGAGTAAAGTTATGCGTTACGGAAGCGAGTTACAGAT ACATTATCAGTTTCTAAAAAATCTAAGCGGTGAGATTTTGGCAGAATATCTTTATTCTGAACAATTATCGGGCAGTAAAA AAGGATATACGCTTCCGTTCTCTCCTCCTGCTTCGGTTTTATTTGGACTCAGTTATAATCCCGAAATCAAGAATTTAAGA GAAACTTATTTTTCGCTCGATTATCGTTTTACGGCTCAGCAAAATCAGATTGTACCGCCCGAAAAAAAAACAGAAAGCAG TCATGTTTTCAATCTCGCATTAGGAACAAAATTACAAGCCGAAAAGCAGGATTTTGCTGTCTCGCTTCAGGTCCAGAATT TATTTAATACAAGATACCTGAATCATACAAGCTTTTACAGACTTATAGAACTTCCGGAAATGGGCAGAAATATTATTCTT TCTGTAAAAGTTCCTTTTTTAATTCATCAATAA
Upstream 100 bases:
>100_bases TATTGATCCGGGAGATTATCATTTTATGATTCGTTTGACTGATAAAGAAGGCTGGCAGACTATTAAAGGCTTAAGTATTA AAATTTTATAAAACCGCTTA
Downstream 100 bases:
>100_bases AAACAACAAATTTTTAATATCTCAAAACCATGAAAAAAGTACAATCCTTTTTTTTATTCCTATTGACAACTTCTGTCTTT ACTGCCTGCAGCAGTGATGA
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MIENKSNSILIFVLFCFAFLTQVHSQNTNSEIKELEEVVIKDQSEKRAKKEASLNTETVNSNFIQRNLGGSLMQSLQRIP GVKTISIGSGGSKPLIRGLSFNQVIVVENGIKHEGQQWGADHGLEIDQYAVNRVEIIKGPLSFIYGSDAIGGAVNIKPVP FPKKNTLGGNVDFTAKNNNEQIGSSLNLFGRNENWFFDTRITSQDYGDYRVPADKVQVYNYTVPLYKNHLRNTAGRELDL HASTGFVGEKFKSVLYFSNIHTKSGFFANAHGLEPRNVNLELHDKSSRDILMPFQEVNHTKISNTTSFEIGNHQLQTQLG FQKNFRREWSHYVNHGYMPPIYPADMYAPQDLERQYDKDVFSVSVKDGFSVDRHQFTVGLNGEKQQNEINGWSFLIPAFN QLNTGLYAYDKIQLNDLWILHGAVRMDYGQIEMKQHTDWFKSDVTQNGQTTQEYLKRSEDLNKTFKSFTWSAGINYNPGK FSFKANAGTSFRMPIAKELASNGVNYHYFRFEKGNPNLDAERSYQLDLGIDWQESKWSVQLSPFFNYFPNFIYLNPTSQH DIYYGAGNQVFEYQQSKVMRYGSELQIHYQFLKNLSGEILAEYLYSEQLSGSKKGYTLPFSPPASVLFGLSYNPEIKNLR ETYFSLDYRFTAQQNQIVPPEKKTESSHVFNLALGTKLQAEKQDFAVSLQVQNLFNTRYLNHTSFYRLIELPEMGRNIIL SVKVPFLIHQ
Sequences:
>Translated_730_residues MIENKSNSILIFVLFCFAFLTQVHSQNTNSEIKELEEVVIKDQSEKRAKKEASLNTETVNSNFIQRNLGGSLMQSLQRIP GVKTISIGSGGSKPLIRGLSFNQVIVVENGIKHEGQQWGADHGLEIDQYAVNRVEIIKGPLSFIYGSDAIGGAVNIKPVP FPKKNTLGGNVDFTAKNNNEQIGSSLNLFGRNENWFFDTRITSQDYGDYRVPADKVQVYNYTVPLYKNHLRNTAGRELDL HASTGFVGEKFKSVLYFSNIHTKSGFFANAHGLEPRNVNLELHDKSSRDILMPFQEVNHTKISNTTSFEIGNHQLQTQLG FQKNFRREWSHYVNHGYMPPIYPADMYAPQDLERQYDKDVFSVSVKDGFSVDRHQFTVGLNGEKQQNEINGWSFLIPAFN QLNTGLYAYDKIQLNDLWILHGAVRMDYGQIEMKQHTDWFKSDVTQNGQTTQEYLKRSEDLNKTFKSFTWSAGINYNPGK FSFKANAGTSFRMPIAKELASNGVNYHYFRFEKGNPNLDAERSYQLDLGIDWQESKWSVQLSPFFNYFPNFIYLNPTSQH DIYYGAGNQVFEYQQSKVMRYGSELQIHYQFLKNLSGEILAEYLYSEQLSGSKKGYTLPFSPPASVLFGLSYNPEIKNLR ETYFSLDYRFTAQQNQIVPPEKKTESSHVFNLALGTKLQAEKQDFAVSLQVQNLFNTRYLNHTSFYRLIELPEMGRNIIL SVKVPFLIHQ >Mature_730_residues MIENKSNSILIFVLFCFAFLTQVHSQNTNSEIKELEEVVIKDQSEKRAKKEASLNTETVNSNFIQRNLGGSLMQSLQRIP GVKTISIGSGGSKPLIRGLSFNQVIVVENGIKHEGQQWGADHGLEIDQYAVNRVEIIKGPLSFIYGSDAIGGAVNIKPVP FPKKNTLGGNVDFTAKNNNEQIGSSLNLFGRNENWFFDTRITSQDYGDYRVPADKVQVYNYTVPLYKNHLRNTAGRELDL HASTGFVGEKFKSVLYFSNIHTKSGFFANAHGLEPRNVNLELHDKSSRDILMPFQEVNHTKISNTTSFEIGNHQLQTQLG FQKNFRREWSHYVNHGYMPPIYPADMYAPQDLERQYDKDVFSVSVKDGFSVDRHQFTVGLNGEKQQNEINGWSFLIPAFN QLNTGLYAYDKIQLNDLWILHGAVRMDYGQIEMKQHTDWFKSDVTQNGQTTQEYLKRSEDLNKTFKSFTWSAGINYNPGK FSFKANAGTSFRMPIAKELASNGVNYHYFRFEKGNPNLDAERSYQLDLGIDWQESKWSVQLSPFFNYFPNFIYLNPTSQH DIYYGAGNQVFEYQQSKVMRYGSELQIHYQFLKNLSGEILAEYLYSEQLSGSKKGYTLPFSPPASVLFGLSYNPEIKNLR ETYFSLDYRFTAQQNQIVPPEKKTESSHVFNLALGTKLQAEKQDFAVSLQVQNLFNTRYLNHTSFYRLIELPEMGRNIIL SVKVPFLIHQ
Specific function: Probable receptor, tonB-dependent [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
None
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 83667; Mature: 83667
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIENKSNSILIFVLFCFAFLTQVHSQNTNSEIKELEEVVIKDQSEKRAKKEASLNTETVN CCCCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEECC SNFIQRNLGGSLMQSLQRIPGVKTISIGSGGSKPLIRGLSFNQVIVVENGIKHEGQQWGA CHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCHHEECCCCCEEEEEECCCCCCCHHCCC DHGLEIDQYAVNRVEIIKGPLSFIYGSDAIGGAVNIKPVPFPKKNTLGGNVDFTAKNNNE CCCCCHHHHHCCEEEEEECCHHHEECCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCH QIGSSLNLFGRNENWFFDTRITSQDYGDYRVPADKVQVYNYTVPLYKNHLRNTAGRELDL HCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHCCCCEEEE HASTGFVGEKFKSVLYFSNIHTKSGFFANAHGLEPRNVNLELHDKSSRDILMPFQEVNHT ECCCCCHHHHHHHHEEEECCCCCCCCEECCCCCCCCEEEEEEECCCCCCEECCHHHCCCE KISNTTSFEIGNHQLQTQLGFQKNFRREWSHYVNHGYMPPIYPADMYAPQDLERQYDKDV ECCCCEEEEECCEEEHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCE FSVSVKDGFSVDRHQFTVGLNGEKQQNEINGWSFLIPAFNQLNTGLYAYDKIQLNDLWIL EEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHCCCEEEEEEEEECEEEEE HGAVRMDYGQIEMKQHTDWFKSDVTQNGQTTQEYLKRSEDLNKTFKSFTWSAGINYNPGK EEEEEECCCCEEEHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCE FSFKANAGTSFRMPIAKELASNGVNYHYFRFEKGNPNLDAERSYQLDLGIDWQESKWSVQ EEEEECCCCEEECCHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEE LSPFFNYFPNFIYLNPTSQHDIYYGAGNQVFEYQQSKVMRYGSELQIHYQFLKNLSGEIL ECCHHHHCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHH AEYLYSEQLSGSKKGYTLPFSPPASVLFGLSYNPEIKNLRETYFSLDYRFTAQQNQIVPP HHHHHHHHCCCCCCCEECCCCCHHHEEEECCCCCCHHHHHHHHHEEEEEEECCCCCCCCC EKKTESSHVFNLALGTKLQAEKQDFAVSLQVQNLFNTRYLNHTSFYRLIELPEMGRNIIL CCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEHHHHHHCCCCCHHEEEEECCCCCCEEEE SVKVPFLIHQ EEECCEEECC >Mature Secondary Structure MIENKSNSILIFVLFCFAFLTQVHSQNTNSEIKELEEVVIKDQSEKRAKKEASLNTETVN CCCCCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCEECC SNFIQRNLGGSLMQSLQRIPGVKTISIGSGGSKPLIRGLSFNQVIVVENGIKHEGQQWGA CHHHHHHCCHHHHHHHHHCCCCEEEEECCCCCCHHEECCCCCEEEEEECCCCCCCHHCCC DHGLEIDQYAVNRVEIIKGPLSFIYGSDAIGGAVNIKPVPFPKKNTLGGNVDFTAKNNNE CCCCCHHHHHCCEEEEEECCHHHEECCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCH QIGSSLNLFGRNENWFFDTRITSQDYGDYRVPADKVQVYNYTVPLYKNHLRNTAGRELDL HCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEHHHHHHHHHCCCCEEEE HASTGFVGEKFKSVLYFSNIHTKSGFFANAHGLEPRNVNLELHDKSSRDILMPFQEVNHT ECCCCCHHHHHHHHEEEECCCCCCCCEECCCCCCCCEEEEEEECCCCCCEECCHHHCCCE KISNTTSFEIGNHQLQTQLGFQKNFRREWSHYVNHGYMPPIYPADMYAPQDLERQYDKDV ECCCCEEEEECCEEEHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCE FSVSVKDGFSVDRHQFTVGLNGEKQQNEINGWSFLIPAFNQLNTGLYAYDKIQLNDLWIL EEEEECCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCHHHHCCCEEEEEEEEECEEEEE HGAVRMDYGQIEMKQHTDWFKSDVTQNGQTTQEYLKRSEDLNKTFKSFTWSAGINYNPGK EEEEEECCCCEEEHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCE FSFKANAGTSFRMPIAKELASNGVNYHYFRFEKGNPNLDAERSYQLDLGIDWQESKWSVQ EEEEECCCCEEECCHHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEEECCCCCCCCEEEE LSPFFNYFPNFIYLNPTSQHDIYYGAGNQVFEYQQSKVMRYGSELQIHYQFLKNLSGEIL ECCHHHHCCCEEEECCCCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEHHHHHCCCHHHH AEYLYSEQLSGSKKGYTLPFSPPASVLFGLSYNPEIKNLRETYFSLDYRFTAQQNQIVPP HHHHHHHHCCCCCCCEECCCCCHHHEEEECCCCCCHHHHHHHHHEEEEEEECCCCCCCCC EKKTESSHVFNLALGTKLQAEKQDFAVSLQVQNLFNTRYLNHTSFYRLIELPEMGRNIIL CCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEHHHHHHCCCCCHHEEEEECCCCCCEEEE SVKVPFLIHQ EEECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]