| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146301010
Identifier: 146301010
GI number: 146301010
Start: 3904650
End: 3906020
Strand: Reverse
Name: 146301010
Synonym: Fjoh_3266
Alternate gene names: NA
Gene position: 3906020-3904650 (Counterclockwise)
Preceding gene: 146301011
Following gene: 146301009
Centisome position: 64.07
GC content: 33.92
Gene sequence:
>1371_bases ATGTCAAGCAAAGAAGCATATAAAGGTGATCTTGATACAGCAGTATTAGAACCAAAAGCAGTAAAAGGAATTTCAATTGA AAAAAATGTTGAAAAACTGGCTAAATACGGCGGTTTTGATTTATTAGAAATGGCAATTGAAGGAGTTCAAAACCTTAACC CGGATAGAAAAGCAAGAAGAAAAATCTTTTTAGGTGAAGTAAACAAAGCAAAAGAAAGAGAAACTCTTTTAAAGACTTTA GAACTTTGGTCTTCAGTTTTAAGCAATAATGAAGCTTTGACTGATATGGTGGCACAAAGTGAAGATAAATGCAAAGAATC TGAAGCTTTGCTTCAAAAAAACCTTGCTAAAGCTGTTGAAGATACAAGAGAAATTGAAGCTGCTTACAGAACACTGGCTT TATTCTTTAAAAACACAGAATCTGACAAAGTAAAAAATGTTACAATTGTAAACGCAGAATTAGATCAGTTAAAAGACCTT GATAACACTCGTTTTATTGATGCAATTCACTCAGAATTAGTTGATAATTACGATCGTTTAGATCTTAAAAATAACTACGG TATTTTGGTAATTCCAGGATATTTAGGATCTAACAAAGTGATTGAAAAATGGGCAAAAATTGCGCATGAAAACAAAGTAA TGTTAGTTACAGATTTCGAACATCTTGATGAACCGGATGATGTAATGGAAATGTTTGATGCTGCTTCATTGACTGGAGGA GATGTTTATCGTTCTAACGTAATCATGACTTGCAACTGGCTTGTTGGCCGCGGCAGATTTGATCAAATTGGAGAAAACGA AGATTTACACGTTGCGCCTTCGGCTGCATTAGCAGGAAAAATATACAAAACATTAATGTCTCAGGTTACTGCAGGTAAGA AATTTGGAGGAATTAATGAAGTTGACGGAGTGAAATTTGATCTTAAGAAAAGCGAAATCGCTAATCTTGAAAACTTAGGA TTAGTTCCGATGGTAAATGAATACGGAAAAGTAATGGCTTTTTCTGCTAAAACATTATTCAGCGGAGATAATTTAGGATT GCAAACGTACTCTGTAGTTCGTGTTTTTGATTATGTGACTAAAGTATTAATGGATTTCCTTAATCGTCGTGCTTTCGAAA ACTTTACTGCTAAAACACGTAAAGAGATTATGAATCAGATCGTTGCTTTCCTTGACGGAATCACTGGTCCGGATAAATTA ATTGAGAATTTTGAAATCCGCAGATTTGAACAAGATCCAATTCAAAAAGACAGAATTTATATGGATATCCATATGAAACC TTATTTCCCTGCTAAAAACTTCCTTATTAAAATGGATGGTCACAAAGGTGACGACGGAACAGAATGGGATACAGATTACG AACAAAAATAA
Upstream 100 bases:
>100_bases CTTTAGAAGACGGAGAAGCAAAACAGGCTTTGTTAGAAAGTCTTGGAGCACTGATCAACGAGTTAAAAGAAAACAAATAA GAAATTAAAATATTTTAGAT
Downstream 100 bases:
>100_bases TTGTACAGTAAATTCAAAAAAAAGGAAACACGCTATATGTGTTTCCTTTTTTAAACAAAACATTGATCTTTTGAATGATC AAACCAAATAATTCAAATTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 456; Mature: 455
Protein sequence:
>456_residues MSSKEAYKGDLDTAVLEPKAVKGISIEKNVEKLAKYGGFDLLEMAIEGVQNLNPDRKARRKIFLGEVNKAKERETLLKTL ELWSSVLSNNEALTDMVAQSEDKCKESEALLQKNLAKAVEDTREIEAAYRTLALFFKNTESDKVKNVTIVNAELDQLKDL DNTRFIDAIHSELVDNYDRLDLKNNYGILVIPGYLGSNKVIEKWAKIAHENKVMLVTDFEHLDEPDDVMEMFDAASLTGG DVYRSNVIMTCNWLVGRGRFDQIGENEDLHVAPSAALAGKIYKTLMSQVTAGKKFGGINEVDGVKFDLKKSEIANLENLG LVPMVNEYGKVMAFSAKTLFSGDNLGLQTYSVVRVFDYVTKVLMDFLNRRAFENFTAKTRKEIMNQIVAFLDGITGPDKL IENFEIRRFEQDPIQKDRIYMDIHMKPYFPAKNFLIKMDGHKGDDGTEWDTDYEQK
Sequences:
>Translated_456_residues MSSKEAYKGDLDTAVLEPKAVKGISIEKNVEKLAKYGGFDLLEMAIEGVQNLNPDRKARRKIFLGEVNKAKERETLLKTL ELWSSVLSNNEALTDMVAQSEDKCKESEALLQKNLAKAVEDTREIEAAYRTLALFFKNTESDKVKNVTIVNAELDQLKDL DNTRFIDAIHSELVDNYDRLDLKNNYGILVIPGYLGSNKVIEKWAKIAHENKVMLVTDFEHLDEPDDVMEMFDAASLTGG DVYRSNVIMTCNWLVGRGRFDQIGENEDLHVAPSAALAGKIYKTLMSQVTAGKKFGGINEVDGVKFDLKKSEIANLENLG LVPMVNEYGKVMAFSAKTLFSGDNLGLQTYSVVRVFDYVTKVLMDFLNRRAFENFTAKTRKEIMNQIVAFLDGITGPDKL IENFEIRRFEQDPIQKDRIYMDIHMKPYFPAKNFLIKMDGHKGDDGTEWDTDYEQK >Mature_455_residues SSKEAYKGDLDTAVLEPKAVKGISIEKNVEKLAKYGGFDLLEMAIEGVQNLNPDRKARRKIFLGEVNKAKERETLLKTLE LWSSVLSNNEALTDMVAQSEDKCKESEALLQKNLAKAVEDTREIEAAYRTLALFFKNTESDKVKNVTIVNAELDQLKDLD NTRFIDAIHSELVDNYDRLDLKNNYGILVIPGYLGSNKVIEKWAKIAHENKVMLVTDFEHLDEPDDVMEMFDAASLTGGD VYRSNVIMTCNWLVGRGRFDQIGENEDLHVAPSAALAGKIYKTLMSQVTAGKKFGGINEVDGVKFDLKKSEIANLENLGL VPMVNEYGKVMAFSAKTLFSGDNLGLQTYSVVRVFDYVTKVLMDFLNRRAFENFTAKTRKEIMNQIVAFLDGITGPDKLI ENFEIRRFEQDPIQKDRIYMDIHMKPYFPAKNFLIKMDGHKGDDGTEWDTDYEQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51684; Mature: 51552
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSKEAYKGDLDTAVLEPKAVKGISIEKNVEKLAKYGGFDLLEMAIEGVQNLNPDRKARR CCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHH KIFLGEVNKAKERETLLKTLELWSSVLSNNEALTDMVAQSEDKCKESEALLQKNLAKAVE HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH DTREIEAAYRTLALFFKNTESDKVKNVTIVNAELDQLKDLDNTRFIDAIHSELVDNYDRL HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHCCCCCE DLKNNYGILVIPGYLGSNKVIEKWAKIAHENKVMLVTDFEHLDEPDDVMEMFDAASLTGG EECCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCC DVYRSNVIMTCNWLVGRGRFDQIGENEDLHVAPSAALAGKIYKTLMSQVTAGKKFGGINE CHHHCCEEEEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC VDGVKFDLKKSEIANLENLGLVPMVNEYGKVMAFSAKTLFSGDNLGLQTYSVVRVFDYVT CCCCEEECCHHHHCCHHHCCCCCCHHHCCCEEEEEHHHEECCCCCCCHHHHHHHHHHHHH KVLMDFLNRRAFENFTAKTRKEIMNQIVAFLDGITGPDKLIENFEIRRFEQDPIQKDRIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCEE MDIHMKPYFPAKNFLIKMDGHKGDDGTEWDTDYEQK EEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure SSKEAYKGDLDTAVLEPKAVKGISIEKNVEKLAKYGGFDLLEMAIEGVQNLNPDRKARR CCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHH KIFLGEVNKAKERETLLKTLELWSSVLSNNEALTDMVAQSEDKCKESEALLQKNLAKAVE HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH DTREIEAAYRTLALFFKNTESDKVKNVTIVNAELDQLKDLDNTRFIDAIHSELVDNYDRL HHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHCCCCCE DLKNNYGILVIPGYLGSNKVIEKWAKIAHENKVMLVTDFEHLDEPDDVMEMFDAASLTGG EECCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECHHHCCCHHHHHHHHHHHCCCCC DVYRSNVIMTCNWLVGRGRFDQIGENEDLHVAPSAALAGKIYKTLMSQVTAGKKFGGINE CHHHCCEEEEEEEEECCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCC VDGVKFDLKKSEIANLENLGLVPMVNEYGKVMAFSAKTLFSGDNLGLQTYSVVRVFDYVT CCCCEEECCHHHHCCHHHCCCCCCHHHCCCEEEEEHHHEECCCCCCCHHHHHHHHHHHHH KVLMDFLNRRAFENFTAKTRKEIMNQIVAFLDGITGPDKLIENFEIRRFEQDPIQKDRIY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHCCCCCCCCCCEE MDIHMKPYFPAKNFLIKMDGHKGDDGTEWDTDYEQK EEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA