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The map label for this gene is ygiD [H]

Identifier: 146300987

GI number: 146300987

Start: 3864330

End: 3865220

Strand: Direct

Name: ygiD [H]

Synonym: Fjoh_3243

Alternate gene names: 146300987

Gene position: 3864330-3865220 (Clockwise)

Preceding gene: 146300986

Following gene: 146300988

Centisome position: 63.38

GC content: 39.39

Gene sequence:

>891_bases
ATGGACAGAAAAGATTTTTTAAAAACTATGGCAATTTTACCAATTGGAGCTGCAGCTATGAAACTCAGTTCTCTTAAAAC
TGTTTCTGATTCTTTTGCAGCAACTGAAAGAATGCCGGTTCTTTTTCTTGGGCACGGTAATCCGATGAATGCTCTGGCCG
ATAACAACTTTACACAGGGTTTTCAAAACGTTTCTAAAACATTACCTAAACCAAAAGCGATTCTTTGTATTTCTGCACAT
TGGGAAACAAAAGGAACTTTTGTAACGGCGATGGAAAAACCAGAAACGATTCATGATTTTGGAGGTTTCCCTCAGGCTTT
ATTTGATGTGCAGTATCCGGCACCTGGAAGCCCGGAACTGGCTCTGGAAACTCAAAAAATTATCACTTCAACTTCTGTTG
GACTGAGTCATGACTGGGGTCTGGATCACGGCTGCTGGACGGTTGTTAAATTCCTTTATCCAGATGCCGATATTCCAGTT
ATACAAATGAGTATCGATTATACTAAACCCGCTTCTTATCACTACGAATTAGGAAAAGAACTTGCTGCACTAAGACGCAA
AGGTGTTCTTATTGTGGGAAGCGGCAACTCAGTTCATAATCTTCGATTGGCAGCGTGGGACAAAATGATGCTTCCCGGAT
ATGCTTTTGAGTGGGCTCATATTGCCAATGAAAAAATGAAAAAAATGATTATTGAAGAAGATCATCAATCTTTAGTGAAT
TTTGATAAACAAGGAAAAGAATTCCAGCTTGCGGTGCCTACGCCTGAGCATTATATGCCGTTATTGTACATTTTATCTCT
TAGGGAAAAAGATGAAAAAGCGACCATTTTTAATGATGCTATTGTAGCGGGATCGCTCAACATGATGTCTGTCAAAATAG
ATAAGGCATGA

Upstream 100 bases:

>100_bases
CAACCATTCTTCCGAAAATCGTTACCGCTGCCACTGTTATTAAACAGAACTTTGTATCTCTTTAAAATGATACTTTTTAC
ACGACTAATAACGATATAAA

Downstream 100 bases:

>100_bases
GCATAAAAAAGTCGGTTTGGATTTCTTTTGGAATCCTTTTTCTAATTTCAATTTTCAGTTTTACCATTATGAATTCGAAT
ACTAAAAATACTAAACTGCA

Product: extradiol ring-cleavage dioxygenase III subunit B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MDRKDFLKTMAILPIGAAAMKLSSLKTVSDSFAATERMPVLFLGHGNPMNALADNNFTQGFQNVSKTLPKPKAILCISAH
WETKGTFVTAMEKPETIHDFGGFPQALFDVQYPAPGSPELALETQKIITSTSVGLSHDWGLDHGCWTVVKFLYPDADIPV
IQMSIDYTKPASYHYELGKELAALRRKGVLIVGSGNSVHNLRLAAWDKMMLPGYAFEWAHIANEKMKKMIIEEDHQSLVN
FDKQGKEFQLAVPTPEHYMPLLYILSLREKDEKATIFNDAIVAGSLNMMSVKIDKA

Sequences:

>Translated_296_residues
MDRKDFLKTMAILPIGAAAMKLSSLKTVSDSFAATERMPVLFLGHGNPMNALADNNFTQGFQNVSKTLPKPKAILCISAH
WETKGTFVTAMEKPETIHDFGGFPQALFDVQYPAPGSPELALETQKIITSTSVGLSHDWGLDHGCWTVVKFLYPDADIPV
IQMSIDYTKPASYHYELGKELAALRRKGVLIVGSGNSVHNLRLAAWDKMMLPGYAFEWAHIANEKMKKMIIEEDHQSLVN
FDKQGKEFQLAVPTPEHYMPLLYILSLREKDEKATIFNDAIVAGSLNMMSVKIDKA
>Mature_296_residues
MDRKDFLKTMAILPIGAAAMKLSSLKTVSDSFAATERMPVLFLGHGNPMNALADNNFTQGFQNVSKTLPKPKAILCISAH
WETKGTFVTAMEKPETIHDFGGFPQALFDVQYPAPGSPELALETQKIITSTSVGLSHDWGLDHGCWTVVKFLYPDADIPV
IQMSIDYTKPASYHYELGKELAALRRKGVLIVGSGNSVHNLRLAAWDKMMLPGYAFEWAHIANEKMKKMIIEEDHQSLVN
FDKQGKEFQLAVPTPEHYMPLLYILSLREKDEKATIFNDAIVAGSLNMMSVKIDKA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=265, Percent_Identity=50.5660377358491, Blast_Score=269, Evalue=2e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 32931; Mature: 32931

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKDFLKTMAILPIGAAAMKLSSLKTVSDSFAATERMPVLFLGHGNPMNALADNNFTQG
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCCHHHH
FQNVSKTLPKPKAILCISAHWETKGTFVTAMEKPETIHDFGGFPQALFDVQYPAPGSPEL
HHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHCCCCCHHHEEEECCCCCCCCE
ALETQKIITSTSVGLSHDWGLDHGCWTVVKFLYPDADIPVIQMSIDYTKPASYHYELGKE
EEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHH
LAALRRKGVLIVGSGNSVHNLRLAAWDKMMLPGYAFEWAHIANEKMKKMIIEEDHQSLVN
HHHHHHCCEEEEECCCCEEEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FDKQGKEFQLAVPTPEHYMPLLYILSLREKDEKATIFNDAIVAGSLNMMSVKIDKA
HCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCEEEECCCEEEEEEEECC
>Mature Secondary Structure
MDRKDFLKTMAILPIGAAAMKLSSLKTVSDSFAATERMPVLFLGHGNPMNALADNNFTQG
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHCCCCHHHH
FQNVSKTLPKPKAILCISAHWETKGTFVTAMEKPETIHDFGGFPQALFDVQYPAPGSPEL
HHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHCCCCCHHHEEEECCCCCCCCE
ALETQKIITSTSVGLSHDWGLDHGCWTVVKFLYPDADIPVIQMSIDYTKPASYHYELGKE
EEEHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHH
LAALRRKGVLIVGSGNSVHNLRLAAWDKMMLPGYAFEWAHIANEKMKKMIIEEDHQSLVN
HHHHHHCCEEEEECCCCEEEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
FDKQGKEFQLAVPTPEHYMPLLYILSLREKDEKATIFNDAIVAGSLNMMSVKIDKA
HCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCEEEECCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]