Click here to switch to the map view.

The map label for this gene is araC [C]

Identifier: 146300986

GI number: 146300986

Start: 3863394

End: 3864224

Strand: Direct

Name: araC [C]

Synonym: Fjoh_3242

Alternate gene names: 146300986

Gene position: 3863394-3864224 (Clockwise)

Preceding gene: 146300984

Following gene: 146300987

Centisome position: 63.37

GC content: 33.33

Gene sequence:

>831_bases
ATGACAGAAATCTTCAAAATGTTCCGTGTTACAGCCGCAGAGTCTGAAAAAATAATGCAGTCTGTAAACGAACCGCATGC
ACATAATTTTGAAGAACTGATTATTGGCAGTAAAGGCCAGCTGGAACATTTTATAGATTTTAGTTCCAAATTAATAGACG
CACCTTTTATAAGTTTTGTAACACAGGGCAAAATTCATCGTGTAAAACCGCTTATAAAAAACGGCGAATGTGATATGTGG
GTTTTACGATTTAAAAGTGAATTTATTGCCGAAACTACTTTTAGCCTGTATGCTTCTTTTCATGATAAAGCAAATATTAG
TTTACAGAGTAATCAGTGTTTTGAAAAACTGGATGTGCTGTGTAAAATGACTTATGATGAATATGTACAGGAATCTCCGG
ATCTCTCTGTAATTAAACAATTATTAAGTACTTTGTTTACTATTATCGAATCGGAACGACGTAAATTGAATCTGGATAAT
GACGAGTCTAAGAAAATTCAGAGTTCGACTTTTAAAAACTTCTTGAGATTGTTAGAAGAACATTATAAGGAATCTAAAGA
TGTAAATTTTTATGCTGAAAAACTTTTTATGACTTCAAGAAACTTAAACCTCATCTGCCAGAATATCTTACAGCAGAGTG
TTTCAGAAATCATAGAAACCAGAAAACTTACCGAAGCTAAAAACCTATTAATGACTACTGATAAAAATGTCGCTGAAATA
GGTTACGAACTCGGATTCAACGAAAAGACATATTTTACACACGCCTTTAAACGCAAAGCAGGCATGACTCCAACTGAGTT
TAGAGACGAAATGCAAAAACTGCTTTCTTAA

Upstream 100 bases:

>100_bases
GTTTTTCCTTTCTTTATTACTACTGCATATCAACTTCAAAATTTTTTGTATTCAAAAATCAAAGTTATGGATTATCTTTA
ACCATCAAAATTTAATCCTC

Downstream 100 bases:

>100_bases
AAACACAACCATTCTTCCGAAAATCGTTACCGCTGCCACTGTTATTAAACAGAACTTTGTATCTCTTTAAAATGATACTT
TTTACACGACTAATAACGAT

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Helix-Turn-Helix Domain-Containing Protein; Regulator Of 4HPA-Hydroxylase Operon; Transcriptional Regulator Arac Family; Transcriptional Regulator PobR; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulatory Protein; PobR Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Pobr Arac Family Protein; Regulator Of 4hpa-Hydroxylase Operon; AraC Protein; AraC Family Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; AraC Family Transcription Regulator Protein; AraC-Family Transcriptional Regulator; AraC-Type Regulatory Protein; AraC-Type Transcription Regulator

Number of amino acids: Translated: 276; Mature: 275

Protein sequence:

>276_residues
MTEIFKMFRVTAAESEKIMQSVNEPHAHNFEELIIGSKGQLEHFIDFSSKLIDAPFISFVTQGKIHRVKPLIKNGECDMW
VLRFKSEFIAETTFSLYASFHDKANISLQSNQCFEKLDVLCKMTYDEYVQESPDLSVIKQLLSTLFTIIESERRKLNLDN
DESKKIQSSTFKNFLRLLEEHYKESKDVNFYAEKLFMTSRNLNLICQNILQQSVSEIIETRKLTEAKNLLMTTDKNVAEI
GYELGFNEKTYFTHAFKRKAGMTPTEFRDEMQKLLS

Sequences:

>Translated_276_residues
MTEIFKMFRVTAAESEKIMQSVNEPHAHNFEELIIGSKGQLEHFIDFSSKLIDAPFISFVTQGKIHRVKPLIKNGECDMW
VLRFKSEFIAETTFSLYASFHDKANISLQSNQCFEKLDVLCKMTYDEYVQESPDLSVIKQLLSTLFTIIESERRKLNLDN
DESKKIQSSTFKNFLRLLEEHYKESKDVNFYAEKLFMTSRNLNLICQNILQQSVSEIIETRKLTEAKNLLMTTDKNVAEI
GYELGFNEKTYFTHAFKRKAGMTPTEFRDEMQKLLS
>Mature_275_residues
TEIFKMFRVTAAESEKIMQSVNEPHAHNFEELIIGSKGQLEHFIDFSSKLIDAPFISFVTQGKIHRVKPLIKNGECDMWV
LRFKSEFIAETTFSLYASFHDKANISLQSNQCFEKLDVLCKMTYDEYVQESPDLSVIKQLLSTLFTIIESERRKLNLDND
ESKKIQSSTFKNFLRLLEEHYKESKDVNFYAEKLFMTSRNLNLICQNILQQSVSEIIETRKLTEAKNLLMTTDKNVAEIG
YELGFNEKTYFTHAFKRKAGMTPTEFRDEMQKLLS

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32213; Mature: 32082

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TEIFKMFRVTAAESEKIMQSVNEPHAHNFEELIIGSKGQLEHFIDFSSKLIDAPFISFV
HHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
TQGKIHRVKPLIKNGECDMWVLRFKSEFIAETTFSLYASFHDKANISLQSNQCFEKLDVL
HCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHH
CKMTYDEYVQESPDLSVIKQLLSTLFTIIESERRKLNLDNDESKKIQSSTFKNFLRLLEE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
HYKESKDVNFYAEKLFMTSRNLNLICQNILQQSVSEIIETRKLTEAKNLLMTTDKNVAEI
HHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
GYELGFNEKTYFTHAFKRKAGMTPTEFRDEMQKLLS
HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA