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The map label for this gene is rhaS [C]

Identifier: 146300095

GI number: 146300095

Start: 2811038

End: 2811910

Strand: Direct

Name: rhaS [C]

Synonym: Fjoh_2340

Alternate gene names: 146300095

Gene position: 2811038-2811910 (Clockwise)

Preceding gene: 146300090

Following gene: 146300096

Centisome position: 46.11

GC content: 35.85

Gene sequence:

>873_bases
ATGAAAACAATTGCCCCAGCTCTTGAAGTGATAACTAACTCATACGGAAGTTCTTTTACCTACACGAAACACGCCGAAAA
GACCAATAGCAAAGCTCATTTATGGCATTATCATCCTGAGATTGAGTTGGTTTATATAAACGGCGGGGCAGGAAAAAGAC
AAATAGGAAGCCATGTTTCCTATTACACAAATGGTAGTTTGATCTTGATAGGCTCTAATTTGCCGCATTGCGGTTTTACG
AATGAACAAACGGGAAACGTAAACGAAACGGTTATTCATATTAAACCTGAGTTTTTGGGGAATGGCTTTTTTGGAGTACC
GGAAATGAGAAAGATTCAAAATGTTTTGAGTCAGTCAAAAGGCGGAATTGCTTTTGGAGGCGAAACAAAAAAACAAATTG
GAAAGAAAATAGAAATGATGGAGCATCAGCTTCCGTTCGAACGTCTGCTTACACTTTTAAGTATTTTGGATGAGTTAGAT
TCATCTGAAGAATACACAATGCTGAATGCAGATGGTTTTGCAATGGAGCTTCAAACTCAAGATAACGATCGTATGAATGT
TGTTTTTAATTATGTAAAAGATAATTTTCAGCAGTCTATCGCTATCGACGAGGTTTCCAGCCTGGTAAGTATGACAACTC
CTTCGTTTTGTCGTTATTTTAAAAAAATATCTAATAAAACATTTACTGAATTTGTAAACGAATATCGTTTGGTACATGCT
TCAAAACTTTTGGCCGAAAAACCAATAAGTATAAACGAGGTTTGTTATGAAAGCGGTTTTAATAATTTCAGCCACTTTAG
TAAATCGTTTAAACAATATACCGGAAAAAGCGCATCGCAATACCGCCACGAACACAAGATTATAATTAGTTAA

Upstream 100 bases:

>100_bases
TTGATGAAAAATTCTCATTTGCGAAACCGTTGTAGGTTAATTTTTAAATTATATTAGGTATTTTTGTTAAATTTGCTATT
ATTTTTTAAAAGGATTTATC

Downstream 100 bases:

>100_bases
TATTTGTTAAAGGTTAAATTTTATCAGCCTCGAATTCATGAATTTAATTCATTGAATTCGAGGCTTTTCTGTTGCTAAAG
AAAAATCATTTCAACCTGTG

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Activator Protein MtlR; Transcriptional Regulator Arac Family; Transcriptional Regulator MtlR; Helix-Turn-Helix AraC Type; Activator Protein; Transcriptional Activator MltR; AraC Family Transcription Regulator Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein AraC Family; Transcriptional Regulator Protein; AraC Family Regulatory Protein; Transcriptional Activator; AraC/XylS Family Transcriptional Regulator; AraC Family Transcription Regulator

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MKTIAPALEVITNSYGSSFTYTKHAEKTNSKAHLWHYHPEIELVYINGGAGKRQIGSHVSYYTNGSLILIGSNLPHCGFT
NEQTGNVNETVIHIKPEFLGNGFFGVPEMRKIQNVLSQSKGGIAFGGETKKQIGKKIEMMEHQLPFERLLTLLSILDELD
SSEEYTMLNADGFAMELQTQDNDRMNVVFNYVKDNFQQSIAIDEVSSLVSMTTPSFCRYFKKISNKTFTEFVNEYRLVHA
SKLLAEKPISINEVCYESGFNNFSHFSKSFKQYTGKSASQYRHEHKIIIS

Sequences:

>Translated_290_residues
MKTIAPALEVITNSYGSSFTYTKHAEKTNSKAHLWHYHPEIELVYINGGAGKRQIGSHVSYYTNGSLILIGSNLPHCGFT
NEQTGNVNETVIHIKPEFLGNGFFGVPEMRKIQNVLSQSKGGIAFGGETKKQIGKKIEMMEHQLPFERLLTLLSILDELD
SSEEYTMLNADGFAMELQTQDNDRMNVVFNYVKDNFQQSIAIDEVSSLVSMTTPSFCRYFKKISNKTFTEFVNEYRLVHA
SKLLAEKPISINEVCYESGFNNFSHFSKSFKQYTGKSASQYRHEHKIIIS
>Mature_290_residues
MKTIAPALEVITNSYGSSFTYTKHAEKTNSKAHLWHYHPEIELVYINGGAGKRQIGSHVSYYTNGSLILIGSNLPHCGFT
NEQTGNVNETVIHIKPEFLGNGFFGVPEMRKIQNVLSQSKGGIAFGGETKKQIGKKIEMMEHQLPFERLLTLLSILDELD
SSEEYTMLNADGFAMELQTQDNDRMNVVFNYVKDNFQQSIAIDEVSSLVSMTTPSFCRYFKKISNKTFTEFVNEYRLVHA
SKLLAEKPISINEVCYESGFNNFSHFSKSFKQYTGKSASQYRHEHKIIIS

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32870; Mature: 32870

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIAPALEVITNSYGSSFTYTKHAEKTNSKAHLWHYHPEIELVYINGGAGKRQIGSHVS
CCCHHHHHHHHHHCCCCCCEEECCHHHCCCCCEEEEECCCEEEEEEECCCCHHHHCCCCE
YYTNGSLILIGSNLPHCGFTNEQTGNVNETVIHIKPEFLGNGFFGVPEMRKIQNVLSQSK
EEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCHHHHHHHHHHHCC
GGIAFGGETKKQIGKKIEMMEHQLPFERLLTLLSILDELDSSEEYTMLNADGFAMELQTQ
CCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECC
DNDRMNVVFNYVKDNFQQSIAIDEVSSLVSMTTPSFCRYFKKISNKTFTEFVNEYRLVHA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
SKLLAEKPISINEVCYESGFNNFSHFSKSFKQYTGKSASQYRHEHKIIIS
HHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCEEEC
>Mature Secondary Structure
MKTIAPALEVITNSYGSSFTYTKHAEKTNSKAHLWHYHPEIELVYINGGAGKRQIGSHVS
CCCHHHHHHHHHHCCCCCCEEECCHHHCCCCCEEEEECCCEEEEEEECCCCHHHHCCCCE
YYTNGSLILIGSNLPHCGFTNEQTGNVNETVIHIKPEFLGNGFFGVPEMRKIQNVLSQSK
EEECCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEHHHHCCCCCCCCHHHHHHHHHHHCC
GGIAFGGETKKQIGKKIEMMEHQLPFERLLTLLSILDELDSSEEYTMLNADGFAMELQTQ
CCEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEEECC
DNDRMNVVFNYVKDNFQQSIAIDEVSSLVSMTTPSFCRYFKKISNKTFTEFVNEYRLVHA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
SKLLAEKPISINEVCYESGFNNFSHFSKSFKQYTGKSASQYRHEHKIIIS
HHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA