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The map label for this gene is yddE [C]

Identifier: 146300003

GI number: 146300003

Start: 2704621

End: 2705484

Strand: Direct

Name: yddE [C]

Synonym: Fjoh_2247

Alternate gene names: 146300003

Gene position: 2704621-2705484 (Clockwise)

Preceding gene: 146300002

Following gene: 146300004

Centisome position: 44.36

GC content: 35.07

Gene sequence:

>864_bases
ATGAGTTTACCTTTTTATATAGTTGATGTTTTTGCCGATAAAAAATATGCCGGAAATCAGCTGGCGGTATTTTTAGAAGC
CCAAAATTTGAGTTCGGAACAAATGCAGCAGATTGCACGTGAGATTAATTTTGCCGAAAGCACATTTGTAACCAAACTTG
ACAGAGAAAATAATAAAGCTGAGATTAGAATATTTACACCAGCTCAGGAAATGCAGTTTGCTGGTCATCCAATAATTGGC
ACTTCGTGGGTTTTGATGAACAAGATTTTTGATAATTCGCCTTCAGAAATTAAACTGGAAGTTCCGATTGGGCCAATTGC
CATTCAAAAAACAGAAGATTTGATTTGGCTCAAAGCAGCACAGCCTAAATTTTGGGATGTTTTCTCAAAAGTTGATTTTA
CATCTTTTAGTAATCTGCAGGTAAGTGATTTTGAAAATCAATTTCCAATTCAGGAAGTTACAACCGGAAGTGCGTTTGTA
CTTGTGCCGCTGAGCAGTAAAAAAGCATTGGAAAATTTAGTTTTAGATAAAGATAAAGCCGATCAATGGATGAAAAATCA
TTGTAAAACAGATCACAGAGGTTTATACTTTTATTATTTAGAAGGTTCAAAAGTATTTAGCCGACTTTTATATGTGCAGC
ATAATCAGTTGATGGAAGATGCAGCAACAGGAAGTGCAAGTACTTGTTTACAGGCTTCATTGCTAAAGAATCATTTGGCT
GAAATTGAAATTGTAAATTATCAGGGAGATTATATTGGCCGTCCATCTGAAATCTATTTCAAAGGAAAATTAACCGATAC
CAATTATGATATAAATATTGGAGGAAAAGCACAGTTTGTTGCCAAAGGAGAGTGGGAAGCTTGA

Upstream 100 bases:

>100_bases
ATCAATTAATAAATAAGATAATTTTAGAGAGAAGAAGCAAGATTTTATAAATGTCTTGTCTATTTCCTCCTGATTCTCTA
AGAAGAAAAAAATAAGAAAA

Downstream 100 bases:

>100_bases
TTTATAGAGAATAGAAGCAAGAGTAAAGATTTTAGAAAATAGAATAAAAATATATAGAGAAAATTAGAAATAAAAGAGAA
GTCTTTCTTCTTTTCTCTTA

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MSLPFYIVDVFADKKYAGNQLAVFLEAQNLSSEQMQQIAREINFAESTFVTKLDRENNKAEIRIFTPAQEMQFAGHPIIG
TSWVLMNKIFDNSPSEIKLEVPIGPIAIQKTEDLIWLKAAQPKFWDVFSKVDFTSFSNLQVSDFENQFPIQEVTTGSAFV
LVPLSSKKALENLVLDKDKADQWMKNHCKTDHRGLYFYYLEGSKVFSRLLYVQHNQLMEDAATGSASTCLQASLLKNHLA
EIEIVNYQGDYIGRPSEIYFKGKLTDTNYDINIGGKAQFVAKGEWEA

Sequences:

>Translated_287_residues
MSLPFYIVDVFADKKYAGNQLAVFLEAQNLSSEQMQQIAREINFAESTFVTKLDRENNKAEIRIFTPAQEMQFAGHPIIG
TSWVLMNKIFDNSPSEIKLEVPIGPIAIQKTEDLIWLKAAQPKFWDVFSKVDFTSFSNLQVSDFENQFPIQEVTTGSAFV
LVPLSSKKALENLVLDKDKADQWMKNHCKTDHRGLYFYYLEGSKVFSRLLYVQHNQLMEDAATGSASTCLQASLLKNHLA
EIEIVNYQGDYIGRPSEIYFKGKLTDTNYDINIGGKAQFVAKGEWEA
>Mature_286_residues
SLPFYIVDVFADKKYAGNQLAVFLEAQNLSSEQMQQIAREINFAESTFVTKLDRENNKAEIRIFTPAQEMQFAGHPIIGT
SWVLMNKIFDNSPSEIKLEVPIGPIAIQKTEDLIWLKAAQPKFWDVFSKVDFTSFSNLQVSDFENQFPIQEVTTGSAFVL
VPLSSKKALENLVLDKDKADQWMKNHCKTDHRGLYFYYLEGSKVFSRLLYVQHNQLMEDAATGSASTCLQASLLKNHLAE
IEIVNYQGDYIGRPSEIYFKGKLTDTNYDINIGGKAQFVAKGEWEA

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=303, Percent_Identity=27.7227722772277, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI74316009, Length=152, Percent_Identity=32.2368421052632, Blast_Score=74, Evalue=2e-13,
Organism=Escherichia coli, GI1787737, Length=294, Percent_Identity=25.8503401360544, Blast_Score=81, Evalue=1e-16,
Organism=Saccharomyces cerevisiae, GI6321818, Length=149, Percent_Identity=34.2281879194631, Blast_Score=82, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 32607; Mature: 32476

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPFYIVDVFADKKYAGNQLAVFLEAQNLSSEQMQQIAREINFAESTFVTKLDRENNKA
CCCCEEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCHHHHEEEECCCCCCE
EIRIFTPAQEMQFAGHPIIGTSWVLMNKIFDNSPSEIKLEVPIGPIAIQKTEDLIWLKAA
EEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCEEEEEEC
QPKFWDVFSKVDFTSFSNLQVSDFENQFPIQEVTTGSAFVLVPLSSKKALENLVLDKDKA
CCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHCCCCHH
DQWMKNHCKTDHRGLYFYYLEGSKVFSRLLYVQHNQLMEDAATGSASTCLQASLLKNHLA
HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
EIEIVNYQGDYIGRPSEIYFKGKLTDTNYDINIGGKAQFVAKGEWEA
EEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCEEEEECCCCCC
>Mature Secondary Structure 
SLPFYIVDVFADKKYAGNQLAVFLEAQNLSSEQMQQIAREINFAESTFVTKLDRENNKA
CCCEEEEEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCHHHHEEEECCCCCCE
EIRIFTPAQEMQFAGHPIIGTSWVLMNKIFDNSPSEIKLEVPIGPIAIQKTEDLIWLKAA
EEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCEEEEEEC
QPKFWDVFSKVDFTSFSNLQVSDFENQFPIQEVTTGSAFVLVPLSSKKALENLVLDKDKA
CCHHHHHHHHCCCCCCCCEEEECCCCCCCHHHCCCCCEEEEEECCCHHHHHHHHCCCCHH
DQWMKNHCKTDHRGLYFYYLEGSKVFSRLLYVQHNQLMEDAATGSASTCLQASLLKNHLA
HHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
EIEIVNYQGDYIGRPSEIYFKGKLTDTNYDINIGGKAQFVAKGEWEA
EEEEEEECCCCCCCCCEEEEEEEEECCCEEEEECCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]